Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   U8327_RS04560 Genome accession   NZ_CP141765
Coordinates   946257..946994 (+) Length   245 a.a.
NCBI ID   WP_000197689.1    Uniprot ID   -
Organism   Escherichia coli strain HYM1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 941257..951994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8327_RS04545 (U8327_04545) clpC 941711..944284 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  U8327_RS04550 (U8327_04550) yfiH 944414..945145 (-) 732 WP_000040154.1 purine nucleoside phosphorylase YfiH -
  U8327_RS04555 (U8327_04555) rluD 945142..946122 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  U8327_RS04560 (U8327_04560) comL 946257..946994 (+) 738 WP_000197689.1 outer membrane protein assembly factor BamD Machinery gene
  U8327_RS04565 (U8327_04565) raiA 947265..947606 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  U8327_RS04570 (U8327_04570) pheL 947710..947757 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  U8327_RS04575 (U8327_04575) pheA 947856..949016 (+) 1161 WP_000200137.1 bifunctional chorismate mutase/prephenate dehydratase -
  U8327_RS04580 (U8327_04580) tyrA 949059..950180 (-) 1122 WP_000225220.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  U8327_RS04585 (U8327_04585) aroF 950191..951261 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  U8327_RS04590 (U8327_04590) yfiL 951471..951836 (+) 366 WP_001314943.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27828.45 Da        Isoelectric Point: 7.9331

>NTDB_id=837528 U8327_RS04560 WP_000197689.1 946257..946994(+) (comL) [Escherichia coli strain HYM1]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAKYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=837528 U8327_RS04560 WP_000197689.1 946257..946994(+) (comL) [Escherichia coli strain HYM1]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCATATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCTCGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCAAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTAATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376