Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   QN061_RS05360 Genome accession   NZ_CP126305
Coordinates   1155712..1157949 (+) Length   745 a.a.
NCBI ID   WP_172566885.1    Uniprot ID   -
Organism   Vibrio fluvialis strain SD21SC3889PM     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1150712..1162949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN061_RS05335 (QN061_05335) - 1151163..1151732 (-) 570 WP_020430034.1 hypothetical protein -
  QN061_RS05340 (QN061_05340) lolC 1151908..1153116 (+) 1209 WP_020430036.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  QN061_RS05345 (QN061_05345) lolD 1153109..1153795 (+) 687 WP_020430037.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  QN061_RS05350 (QN061_05350) lolE 1153796..1155040 (+) 1245 WP_104965885.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  QN061_RS05355 (QN061_05355) - 1155173..1155703 (-) 531 WP_020327788.1 DUF2062 domain-containing protein -
  QN061_RS05360 (QN061_05360) comEC 1155712..1157949 (+) 2238 WP_172566885.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QN061_RS05365 (QN061_05365) msbA 1157982..1159730 (+) 1749 WP_020327786.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  QN061_RS05370 (QN061_05370) lpxK 1159734..1160741 (+) 1008 WP_047456909.1 tetraacyldisaccharide 4'-kinase -
  QN061_RS05375 (QN061_05375) - 1160722..1160901 (+) 180 WP_020327784.1 Trm112 family protein -
  QN061_RS05380 (QN061_05380) kdsB 1160901..1161644 (+) 744 WP_172566886.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 83451.86 Da        Isoelectric Point: 8.6571

>NTDB_id=837424 QN061_RS05360 WP_172566885.1 1155712..1157949(+) (comEC) [Vibrio fluvialis strain SD21SC3889PM]
MTLYSNYWMLASFSLTVLSAPLWPWMPEWDFAFICLAALMTTLVVSRFRVFGGIALALLVIVTHGNVVRSQSNTIFQAGQ
DITIKGEVDSFFKQISYGYEGTVVVRSINGQQLHTFWQPKVRLIAPVDLQIGDQFEFSVMVKPVYGRRNEAGFDLEAYYF
SQGWVARVNVKPQSKFEVVSTPNFRSMLYRQIKTWTQNSPSQGMILALTFGDRNGIHEAEWRSLRNSGLIHLVAISGLHI
GMAFAIGYLIGTAMMRLHVSLLWMPFVCGMCIAAIYAWLAGFTLPTQRALLMCGLNVALTMSGVRVTAVQRILITLAAVL
IVTPFAPLSNSFWLSFLAVALVLYQLADRTTCHGWRKWLTMQCSLVTMMIPVSAYFFSGFSVSSALYNLIFIPYFSFVIV
PLLFLALFLTTFAGDITWLWRGIDLSFWPLQRALEWAGSSWIAVSQTATVVFSVGLLLWICRPILSWRAKLYAGIALLGF
GFFTPQDERWRVDILDVGHGLAVLIERNHNALLYDTGSSWPEGSYVRSLIVPILNQRGMDSLDGLILSHTDNDHAGGLKD
AETLLSPKWVVASQSGPNWQACHAGEQREWQGLTMTALWPPQTVNRAYNLQSCVIRLSDPEYGHSLLLAGDVTAVGEWLL
SRQPMDIQSDVIIVPHHGSKTSSTRQFIERVSPQVAIASLAKGNQWQLPHRSVVARYLDAGSDWLDTGEAGQITLTYQAQ
SRQLSTLRQIGNPSWYRQMLRKGVE

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=837424 QN061_RS05360 WP_172566885.1 1155712..1157949(+) (comEC) [Vibrio fluvialis strain SD21SC3889PM]
ATGACTCTCTATTCGAATTACTGGATGCTCGCTTCGTTCTCGCTCACCGTATTGTCTGCGCCCCTTTGGCCGTGGATGCC
AGAGTGGGATTTTGCATTCATTTGCCTTGCTGCTCTGATGACCACGCTCGTGGTGAGCCGATTCAGAGTTTTTGGCGGGA
TCGCGCTTGCCTTGTTAGTGATAGTAACACACGGCAACGTTGTGAGATCTCAATCCAACACTATTTTTCAAGCAGGGCAG
GATATTACCATAAAAGGTGAAGTTGACAGCTTTTTTAAGCAAATTAGTTATGGTTATGAAGGGACTGTAGTAGTCAGATC
AATCAATGGACAACAATTGCACACTTTTTGGCAGCCGAAGGTGCGGTTAATTGCTCCGGTCGATCTGCAAATTGGCGATC
AGTTTGAGTTTTCTGTAATGGTTAAACCCGTTTATGGCCGCCGTAATGAGGCCGGTTTTGACTTAGAAGCTTACTACTTC
AGTCAGGGTTGGGTTGCGAGAGTGAACGTTAAACCTCAGTCAAAATTTGAGGTCGTTTCAACGCCGAATTTTCGCAGTAT
GTTGTACCGCCAAATCAAAACATGGACGCAAAACAGCCCTTCTCAAGGCATGATCTTGGCGCTGACATTTGGTGACCGCA
ACGGCATTCATGAAGCTGAATGGCGCTCACTGAGAAATAGCGGACTCATCCATCTGGTGGCGATATCCGGTTTGCATATT
GGCATGGCGTTCGCGATTGGTTATCTGATTGGAACTGCGATGATGCGGCTGCATGTCAGTTTGCTGTGGATGCCTTTCGT
TTGCGGGATGTGTATTGCCGCGATTTATGCATGGCTGGCAGGATTTACCTTGCCGACCCAGCGCGCTTTGTTGATGTGCG
GTCTCAACGTCGCTCTCACGATGAGTGGCGTGCGTGTGACGGCGGTGCAGCGAATCCTTATCACCCTTGCTGCGGTATTA
ATCGTGACGCCGTTTGCGCCGCTCTCCAACAGTTTCTGGCTCTCATTCTTGGCGGTCGCGTTGGTTTTGTATCAATTGGC
AGACCGAACAACATGTCATGGCTGGCGAAAATGGCTGACGATGCAGTGCTCGTTGGTCACTATGATGATTCCAGTTTCCG
CATATTTTTTCTCCGGGTTCAGTGTTTCGTCGGCACTCTATAACCTGATTTTTATTCCTTACTTCAGCTTTGTCATCGTG
CCGCTGCTTTTTCTCGCACTGTTTCTCACTACCTTTGCCGGAGATATCACCTGGCTGTGGCGTGGGATTGACCTGAGCTT
CTGGCCACTGCAGCGGGCACTGGAATGGGCGGGATCGAGCTGGATTGCGGTAAGTCAGACGGCGACGGTCGTATTTAGTG
TTGGCCTTCTCCTTTGGATTTGCCGCCCGATATTAAGCTGGCGGGCTAAACTCTATGCGGGAATTGCATTACTTGGCTTT
GGCTTTTTTACCCCACAGGATGAGCGTTGGCGAGTTGACATCCTTGATGTCGGGCACGGTCTGGCAGTGTTGATTGAACG
GAATCACAACGCCCTGTTGTACGACACCGGCAGTAGCTGGCCTGAAGGCAGTTACGTTCGCTCTTTGATTGTTCCAATAC
TCAATCAGCGCGGTATGGACTCTCTGGATGGTTTAATTCTCAGTCATACAGACAATGACCACGCTGGTGGTTTAAAAGAT
GCCGAAACCTTATTGTCCCCGAAATGGGTTGTGGCGAGTCAGTCTGGTCCAAATTGGCAGGCTTGCCACGCGGGAGAACA
GAGGGAATGGCAAGGACTGACGATGACGGCACTTTGGCCGCCGCAAACCGTCAATCGTGCTTATAATCTGCAGTCGTGCG
TGATTCGATTAAGCGATCCTGAATACGGTCATTCACTACTTCTGGCTGGCGATGTTACGGCAGTCGGTGAGTGGTTACTC
AGTCGGCAACCCATGGATATTCAGAGCGATGTCATCATTGTGCCTCATCACGGCAGTAAAACGTCCTCAACGCGTCAGTT
TATCGAGCGGGTTTCCCCGCAAGTGGCCATTGCATCTCTGGCGAAAGGGAATCAATGGCAGTTGCCGCATCGCAGTGTGG
TGGCGCGTTATCTGGATGCGGGATCCGACTGGCTTGATACTGGCGAGGCGGGGCAAATCACTCTGACCTATCAAGCTCAA
TCCCGGCAGCTATCGACTCTGCGCCAAATAGGAAATCCTTCATGGTATAGGCAGATGCTACGTAAAGGGGTAGAATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(32-173)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-678)

Competence protein (Competence)

(208-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

53.662

100

0.541
  comEC Vibrio parahaemolyticus RIMD 2210633

42.098

100

0.426
  comEC Vibrio campbellii strain DS40M4

41.27

100

0.419