Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   QNM98_RS17385 Genome accession   NZ_CP126226
Coordinates   3520104..3520793 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain B31     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3515104..3525793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNM98_RS17350 (QNM98_17350) - 3515302..3515784 (-) 483 WP_015418332.1 flagellar protein FlgN -
  QNM98_RS17355 (QNM98_17355) flgM 3515799..3516065 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  QNM98_RS17360 (QNM98_17360) - 3516135..3516554 (-) 420 WP_015418333.1 TIGR03826 family flagellar region protein -
  QNM98_RS17365 (QNM98_17365) comFC 3516628..3517317 (-) 690 WP_196493397.1 phosphoribosyltransferase family protein Machinery gene
  QNM98_RS17370 (QNM98_17370) - 3517323..3517607 (-) 285 WP_003151389.1 competence protein ComFB -
  QNM98_RS17375 (QNM98_17375) comFA 3517665..3519050 (-) 1386 WP_015418335.1 DEAD/DEAH box helicase Machinery gene
  QNM98_RS17380 (QNM98_17380) - 3519158..3520006 (-) 849 WP_015418336.1 DegV family protein -
  QNM98_RS17385 (QNM98_17385) degU 3520104..3520793 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QNM98_RS17390 (QNM98_17390) degS 3520870..3522033 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  QNM98_RS17395 (QNM98_17395) - 3522256..3522903 (+) 648 WP_003151384.1 YigZ family protein -
  QNM98_RS17400 (QNM98_17400) - 3522908..3524122 (+) 1215 WP_015418337.1 LCP family protein -
  QNM98_RS17405 (QNM98_17405) - 3524212..3525288 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=837210 QNM98_RS17385 WP_003219701.1 3520104..3520793(-) (degU) [Bacillus velezensis strain B31]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=837210 QNM98_RS17385 WP_003219701.1 3520104..3520793(-) (degU) [Bacillus velezensis strain B31]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTACCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1