Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QNM98_RS17365 Genome accession   NZ_CP126226
Coordinates   3516628..3517317 (-) Length   229 a.a.
NCBI ID   WP_196493397.1    Uniprot ID   -
Organism   Bacillus velezensis strain B31     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3511628..3522317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNM98_RS17330 (QNM98_17330) fliW 3511719..3512150 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  QNM98_RS17335 (QNM98_17335) - 3512180..3512749 (-) 570 WP_007407476.1 DUF6470 family protein -
  QNM98_RS17340 (QNM98_17340) flgL 3512840..3513757 (-) 918 WP_015418330.1 flagellar hook-associated protein FlgL -
  QNM98_RS17345 (QNM98_17345) flgK 3513769..3515286 (-) 1518 WP_015418331.1 flagellar hook-associated protein FlgK -
  QNM98_RS17350 (QNM98_17350) - 3515302..3515784 (-) 483 WP_015418332.1 flagellar protein FlgN -
  QNM98_RS17355 (QNM98_17355) flgM 3515799..3516065 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  QNM98_RS17360 (QNM98_17360) - 3516135..3516554 (-) 420 WP_015418333.1 TIGR03826 family flagellar region protein -
  QNM98_RS17365 (QNM98_17365) comFC 3516628..3517317 (-) 690 WP_196493397.1 phosphoribosyltransferase family protein Machinery gene
  QNM98_RS17370 (QNM98_17370) - 3517323..3517607 (-) 285 WP_003151389.1 competence protein ComFB -
  QNM98_RS17375 (QNM98_17375) comFA 3517665..3519050 (-) 1386 WP_015418335.1 DEAD/DEAH box helicase Machinery gene
  QNM98_RS17380 (QNM98_17380) - 3519158..3520006 (-) 849 WP_015418336.1 DegV family protein -
  QNM98_RS17385 (QNM98_17385) degU 3520104..3520793 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QNM98_RS17390 (QNM98_17390) degS 3520870..3522033 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25245.83 Da        Isoelectric Point: 8.0779

>NTDB_id=837208 QNM98_RS17365 WP_196493397.1 3516628..3517317(-) (comFC) [Bacillus velezensis strain B31]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFSAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=837208 QNM98_RS17365 WP_196493397.1 3516628..3517317(-) (comFC) [Bacillus velezensis strain B31]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTTCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598