Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QNN06_RS31110 Genome accession   NZ_CP126144
Coordinates   6378743..6379255 (-) Length   170 a.a.
NCBI ID   WP_213116970.1    Uniprot ID   A0A942YU00
Organism   Neobacillus sp. 114     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6373743..6384255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNN06_RS31090 rplI 6374861..6375310 (-) 450 WP_213116973.1 50S ribosomal protein L9 -
  QNN06_RS31095 - 6375307..6377280 (-) 1974 WP_217032398.1 DHH family phosphoesterase -
  QNN06_RS31100 - 6377306..6378250 (-) 945 WP_217032396.1 YybS family protein -
  QNN06_RS31105 rpsR 6378451..6378690 (-) 240 WP_173062335.1 30S ribosomal protein S18 -
  QNN06_RS31110 ssbA 6378743..6379255 (-) 513 WP_213116970.1 single-stranded DNA-binding protein Machinery gene
  QNN06_RS31115 rpsF 6379325..6379612 (-) 288 WP_213116969.1 30S ribosomal protein S6 -
  QNN06_RS31120 ychF 6379784..6380884 (-) 1101 WP_213116968.1 redox-regulated ATPase YchF -
  QNN06_RS31125 - 6381184..6383940 (+) 2757 WP_284036724.1 SH3 domain-containing protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18360.30 Da        Isoelectric Point: 4.9528

>NTDB_id=836977 QNN06_RS31110 WP_213116970.1 6378743..6379255(-) (ssbA) [Neobacillus sp. 114]
MMNRVVLVGRLTKDPDLRYTPSGVAVATFTLAVNRAFSNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRIQTR
NYEGQDGKRVYVTEIVAESVQFLEPKGASGGGGGRGNDFYGAPPMEPQGNPFGGGNQNQRQNSNQGFTKVNDDPFAGSGQ
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=836977 QNN06_RS31110 WP_213116970.1 6378743..6379255(-) (ssbA) [Neobacillus sp. 114]
ATGATGAATCGTGTCGTTCTTGTTGGCCGTTTAACTAAAGATCCTGACCTTCGTTATACACCAAGCGGCGTTGCAGTTGC
TACCTTTACTTTAGCTGTAAATCGGGCATTTTCGAATCAGCAGGGGGAACGCGAAGCAGATTTTATTAACTGTGTCGTAT
GGAGAAAACCGGCAGAAAATGTGGCAAACTTCTTAAAAAAAGGAAGTTTAGCAGGTGTTGACGGTCGGATTCAAACCCGC
AACTATGAAGGACAAGATGGCAAACGCGTATATGTTACAGAGATTGTAGCAGAAAGTGTTCAGTTCTTAGAACCAAAAGG
CGCATCAGGCGGCGGTGGCGGAAGAGGCAACGATTTCTATGGTGCACCTCCAATGGAGCCGCAAGGAAACCCATTTGGCG
GCGGCAATCAGAATCAACGACAAAATTCTAACCAAGGTTTTACAAAAGTAAATGATGATCCATTTGCAGGAAGCGGCCAA
ATCGACATTTCTGACGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.571

100

0.706
  ssb Latilactobacillus sakei subsp. sakei 23K

56.069

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

62.353

0.4