Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   U7118_RS02345 Genome accession   NZ_CP141283
Coordinates   445287..446420 (+) Length   377 a.a.
NCBI ID   WP_324271432.1    Uniprot ID   -
Organism   Bacillus subtilis strain DKU_09     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 440287..451420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U7118_RS02315 (U7118_02315) ywmC 441096..441779 (+) 684 WP_041334706.1 vWA domain-containing protein -
  U7118_RS02320 (U7118_02320) - 441910..442050 (+) 141 WP_014481180.1 hypothetical protein -
  U7118_RS02325 (U7118_02325) ywmD 442103..442777 (+) 675 WP_014481179.1 vWA domain-containing protein -
  U7118_RS02330 (U7118_02330) - 442872..443033 (+) 162 WP_003227706.1 hypothetical protein -
  U7118_RS02335 (U7118_02335) fdhD 443266..444054 (+) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  U7118_RS02340 (U7118_02340) moaA 444070..445095 (+) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  U7118_RS02345 (U7118_02345) rapC 445287..446420 (+) 1134 WP_324271432.1 response regulator aspartate phosphatase RapB Regulator
  U7118_RS02350 (U7118_02350) - 446575..447054 (+) 480 WP_003244390.1 hypothetical protein -
  U7118_RS02355 (U7118_02355) csbD 447127..447315 (+) 189 WP_014481173.1 stress response protein CsbD -
  U7118_RS02360 (U7118_02360) - 447528..447740 (+) 213 Protein_469 urea ABC transporter substrate-binding protein -
  U7118_RS02365 (U7118_02365) - 448007..448165 (+) 159 WP_120363539.1 hypothetical protein -
  U7118_RS02370 (U7118_02370) ureA 448360..448677 (+) 318 WP_046160948.1 urease subunit gamma -
  U7118_RS02375 (U7118_02375) ureB 448674..449048 (+) 375 WP_015251023.1 urease subunit beta -
  U7118_RS02380 (U7118_02380) ureC 449045..450754 (+) 1710 WP_003243090.1 urease subunit alpha -
  U7118_RS02385 (U7118_02385) ywnA 450889..451290 (+) 402 WP_003227734.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45037.14 Da        Isoelectric Point: 4.7537

>NTDB_id=836672 U7118_RS02345 WP_324271432.1 445287..446420(+) (rapC) [Bacillus subtilis strain DKU_09]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHHEQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=836672 U7118_RS02345 WP_324271432.1 445287..446420(+) (rapC) [Bacillus subtilis strain DKU_09]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTAATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCACTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTAATCGGATCAGCCCTTTATAACATTGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCACGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

MalT-like TPR region (TPR_MalT)

(154-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.4

99.469

0.422