Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QNH48_RS30345 Genome accession   NZ_CP126115
Coordinates   6213388..6213918 (-) Length   176 a.a.
NCBI ID   WP_133369894.1    Uniprot ID   -
Organism   Neobacillus sp. YX16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6208388..6218918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH48_RS30325 (QNH48_30325) rplI 6209573..6210022 (-) 450 WP_283953297.1 50S ribosomal protein L9 -
  QNH48_RS30330 (QNH48_30330) - 6210019..6211992 (-) 1974 WP_283953298.1 DHH family phosphoesterase -
  QNH48_RS30335 (QNH48_30335) - 6212016..6212963 (-) 948 WP_283953299.1 YybS family protein -
  QNH48_RS30340 (QNH48_30340) rpsR 6213091..6213333 (-) 243 WP_063255175.1 30S ribosomal protein S18 -
  QNH48_RS30345 (QNH48_30345) ssbA 6213388..6213918 (-) 531 WP_133369894.1 single-stranded DNA-binding protein Machinery gene
  QNH48_RS30350 (QNH48_30350) rpsF 6213985..6214272 (-) 288 WP_045519104.1 30S ribosomal protein S6 -
  QNH48_RS30355 (QNH48_30355) ychF 6214885..6215985 (-) 1101 WP_283953300.1 redox-regulated ATPase YchF -
  QNH48_RS30360 (QNH48_30360) - 6216151..6218148 (-) 1998 WP_283953301.1 molybdopterin-dependent oxidoreductase -
  QNH48_RS30365 (QNH48_30365) - 6218224..6218421 (-) 198 WP_095247385.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19363.20 Da        Isoelectric Point: 5.2852

>NTDB_id=836672 QNH48_RS30345 WP_133369894.1 6213388..6213918(-) (ssbA) [Neobacillus sp. YX16]
MMNRVVLVGRLTKDPDLRYTPNGVPVATFTLAVNRPFSSQAGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRIQTR
NYEGQDGKRVYVTEVQAESVQFLEPKNASSGGGRSDNDHFGAPPREPQGNPYGGGNQNQRQYQNNNNNNNKGFTKVDDDP
FAGNGQIDISDDDLPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=836672 QNH48_RS30345 WP_133369894.1 6213388..6213918(-) (ssbA) [Neobacillus sp. YX16]
ATGATGAATCGTGTCGTGCTTGTTGGCCGTTTAACAAAAGATCCTGATTTGCGTTATACACCAAATGGGGTTCCTGTAGC
TACTTTTACTTTAGCAGTTAACCGCCCGTTTTCTAGTCAGGCTGGTGAGCGTGAAGCAGACTTTATTAATTGTGTTGTTT
GGCGAAAACCTGCTGAAAATGTGGCGAACTTCTTGAAAAAGGGCAGTCTTGCAGGTGTTGATGGCCGTATTCAAACCCGC
AACTATGAAGGACAAGATGGTAAGCGTGTTTACGTTACTGAAGTTCAGGCAGAAAGTGTTCAATTTCTTGAACCTAAAAA
TGCATCTAGCGGCGGCGGAAGAAGCGACAACGATCACTTCGGTGCACCTCCAAGGGAACCGCAAGGAAATCCTTATGGCG
GCGGCAATCAGAATCAACGTCAGTATCAAAACAACAACAATAATAATAACAAAGGTTTTACTAAAGTGGATGATGATCCG
TTCGCAGGTAACGGTCAGATAGACATCTCCGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.746

100

0.676
  ssb Latilactobacillus sakei subsp. sakei 23K

54.444

100

0.557
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

60.227

0.381