Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QNH39_RS27895 Genome accession   NZ_CP126114
Coordinates   5651175..5651705 (-) Length   176 a.a.
NCBI ID   WP_066097152.1    Uniprot ID   -
Organism   Neobacillus novalis strain XLM17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5646175..5656705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH39_RS27875 (QNH39_27875) rplI 5647372..5647821 (-) 450 WP_066094345.1 50S ribosomal protein L9 -
  QNH39_RS27880 (QNH39_27880) - 5647818..5649791 (-) 1974 WP_066094348.1 DHH family phosphoesterase -
  QNH39_RS27885 (QNH39_27885) - 5649817..5650761 (-) 945 WP_066094351.1 YybS family protein -
  QNH39_RS27890 (QNH39_27890) rpsR 5650880..5651119 (-) 240 WP_024030263.1 30S ribosomal protein S18 -
  QNH39_RS27895 (QNH39_27895) ssbA 5651175..5651705 (-) 531 WP_066097152.1 single-stranded DNA-binding protein Machinery gene
  QNH39_RS27900 (QNH39_27900) rpsF 5651780..5652067 (-) 288 WP_024030261.1 30S ribosomal protein S6 -
  QNH39_RS27905 (QNH39_27905) ychF 5652280..5653380 (-) 1101 WP_066094354.1 redox-regulated ATPase YchF -
  QNH39_RS27910 (QNH39_27910) - 5653502..5655499 (-) 1998 WP_066094357.1 molybdopterin-dependent oxidoreductase -
  QNH39_RS27915 (QNH39_27915) - 5655542..5655742 (-) 201 WP_066094360.1 DUF951 domain-containing protein -
  QNH39_RS27920 (QNH39_27920) - 5655772..5656632 (-) 861 WP_066094363.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19449.29 Da        Isoelectric Point: 5.2939

>NTDB_id=836619 QNH39_RS27895 WP_066097152.1 5651175..5651705(-) (ssbA) [Neobacillus novalis strain XLM17]
MMNRVVLVGRLTKDPDLRYTPNGVPVATFSLAVNRPFSNQQGEKETDFINCVVWRRPAENVANYLKKGSLAGVDGRVQTR
NYEGQDGKRVYVTEVLAESVQFLEPKSSSGGGGRSDNDHFGAPPREPQGSPYGNSNQNQRSNQNQNQQQNKGFTKVDEDP
FAGNGQIDISDDDLPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=836619 QNH39_RS27895 WP_066097152.1 5651175..5651705(-) (ssbA) [Neobacillus novalis strain XLM17]
ATGATGAATCGTGTCGTGCTTGTTGGACGTTTAACGAAGGATCCTGATTTGCGCTATACGCCAAATGGTGTCCCCGTTGC
TACTTTTTCTTTAGCAGTTAATCGCCCATTTTCAAATCAGCAAGGTGAAAAAGAAACAGATTTTATTAATTGTGTTGTTT
GGCGCCGTCCTGCTGAAAATGTGGCAAACTATTTGAAAAAGGGTAGTCTAGCAGGCGTTGATGGTCGTGTTCAAACCCGC
AACTATGAAGGACAAGATGGTAAGCGTGTATACGTTACAGAGGTTTTGGCTGAGAGTGTACAATTCCTAGAACCTAAAAG
TTCATCTGGCGGTGGCGGAAGAAGCGACAACGATCATTTTGGTGCTCCACCACGGGAACCACAAGGCAGCCCTTATGGAA
ACAGCAATCAGAATCAACGCTCAAATCAAAACCAGAATCAACAACAAAATAAGGGTTTTACAAAGGTGGATGAAGATCCA
TTCGCAGGAAATGGTCAAATCGACATCTCTGATGACGATCTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.878

100

0.636
  ssb Latilactobacillus sakei subsp. sakei 23K

52.381

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

60.227

0.375