Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   U5640_RS21125 Genome accession   NZ_CP141223
Coordinates   4586447..4587112 (-) Length   221 a.a.
NCBI ID   WP_340377329.1    Uniprot ID   -
Organism   Streptomyces sp. SS7     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4581447..4592112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - vraR 4586447..4587112 (-) 666 - - Regulator

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23882.59 Da        Isoelectric Point: 4.7385

>NTDB_id=836619 U5640_RS21125 WP_340377329.1 4586447..4587112(-) (vraR) [Streptomyces sp. SS7]
MTIRVLIADDQMMVREGFSVLLNAMPDIEVVGEAVNGREAVDRVRELAPDVVLMDIRMPELNGIEATREIVAADDAAKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARRLADGVRVVAAGEALLAPSVTRRLITEFSKLSNNPALPRAAQAAYGDLTE
RETEVLVLIAQGLSNVEIAGRLVVAESTVKTHVSRILVKLGLRDRTQAAVFAYEARLVTPG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=836619 U5640_RS21125 WP_340377329.1 4586447..4587112(-) (vraR) [Streptomyces sp. SS7]
ATGACGATCCGGGTTCTCATAGCCGACGACCAGATGATGGTGCGCGAGGGCTTCTCGGTCCTGTTGAACGCGATGCCGGA
CATCGAGGTCGTCGGCGAGGCGGTCAACGGCCGTGAGGCGGTGGACCGGGTCCGCGAGCTGGCCCCCGACGTGGTCCTGA
TGGACATCCGGATGCCCGAGCTGAACGGCATCGAGGCGACCCGGGAGATCGTGGCGGCGGACGACGCGGCGAAGGTCCTG
GTGCTCACCACCTTCGACCTCGACGAGTACGTGTACCAGGCCCTGCGCGCGGGCGCCTCCGGCTTCCTCCTCAAGGACGC
CTCGGCCCGCCGGCTCGCGGACGGGGTCCGGGTGGTGGCGGCCGGCGAGGCACTGCTCGCGCCCTCCGTCACCCGGCGTC
TGATCACCGAGTTCTCCAAGCTGTCGAACAACCCCGCGCTGCCCCGCGCGGCCCAGGCCGCCTACGGCGATCTGACCGAG
CGGGAGACGGAGGTCCTGGTGCTGATCGCCCAAGGCCTGTCGAACGTCGAGATAGCGGGCCGGCTGGTGGTCGCGGAGTC
CACCGTCAAGACCCATGTGAGCAGGATCCTGGTCAAGCTGGGGCTGCGGGACCGGACCCAGGCGGCGGTGTTCGCGTACG
AGGCGAGACTGGTGACCCCGGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(158-212)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.413

98.643

0.448
  degU Bacillus subtilis subsp. subtilis str. 168

41.935

98.19

0.412