Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QNH23_RS00525 Genome accession   NZ_CP126113
Coordinates   114591..115721 (+) Length   376 a.a.
NCBI ID   WP_313959653.1    Uniprot ID   -
Organism   Siminovitchia fortis strain XLM16     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 109591..120721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH23_RS00505 (QNH23_00505) - 110560..111423 (+) 864 WP_120070359.1 ROK family protein -
  QNH23_RS00510 (QNH23_00510) - 111500..112135 (-) 636 WP_120070356.1 YigZ family protein -
  QNH23_RS00515 (QNH23_00515) - 112289..113428 (+) 1140 WP_120070353.1 sensor histidine kinase -
  QNH23_RS00520 (QNH23_00520) - 113457..114137 (+) 681 WP_120070350.1 response regulator transcription factor -
  QNH23_RS00525 (QNH23_00525) comFA 114591..115721 (+) 1131 WP_313959653.1 DEAD/DEAH box helicase Machinery gene
  QNH23_RS00530 (QNH23_00530) - 115714..116415 (+) 702 WP_120070344.1 ComF family protein -
  QNH23_RS00535 (QNH23_00535) flgM 116500..116766 (+) 267 WP_120070341.1 flagellar biosynthesis anti-sigma factor FlgM -
  QNH23_RS00540 (QNH23_00540) - 116786..117271 (+) 486 WP_120070338.1 flagellar protein FlgN -
  QNH23_RS00545 (QNH23_00545) flgK 117308..118744 (+) 1437 WP_120070334.1 flagellar hook-associated protein FlgK -
  QNH23_RS00550 (QNH23_00550) flgL 118758..119660 (+) 903 WP_120070332.1 flagellar hook-associated protein FlgL -
  QNH23_RS00555 (QNH23_00555) - 119719..120288 (+) 570 WP_120070329.1 DUF6470 family protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 42748.39 Da        Isoelectric Point: 9.8519

>NTDB_id=836522 QNH23_RS00525 WP_313959653.1 114591..115721(+) (comFA) [Siminovitchia fortis strain XLM16]
MMGRVSQCTDFYRWTSPPLKWDSGSHLQWDGQLSKGQEAASEAVVAAVRNKDEFLVWAVCGAGKTEVLFSGINEALKLGH
RICIATPRTDVVLELAPRIQKVFPSAEVSALYGGSEDRHRFSPITISTTHQLLRFHHAFDTMIVDEVDAFPYTFDASLQW
AVKKSAKPEAARIYLTATPSRKWQDECRFGKRKFIKIPARFHRRPLPLPRFAWCGNWQKRLEKSRLPYNVMEWTENRLKL
GKQALIFLPHIELMKKSLSIFQKLHPAIESVHAEDPLRKEKVKRMRAGETPILLTTTILERGVTFPNIDVAVLGAEDDIF
TEAALVQIAGRVGRSSEYPSGDITFFHYGRTKAMIRALLHIDHMNKEAQKAGLLDE

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=836522 QNH23_RS00525 WP_313959653.1 114591..115721(+) (comFA) [Siminovitchia fortis strain XLM16]
ATGATGGGAAGAGTGTCACAATGCACGGACTTTTATCGTTGGACCAGCCCTCCTTTGAAATGGGATTCCGGTAGCCATTT
GCAATGGGACGGTCAGCTTTCCAAAGGACAGGAAGCTGCTTCTGAAGCGGTGGTTGCCGCTGTCCGGAACAAAGATGAAT
TTCTTGTATGGGCGGTATGCGGCGCTGGAAAAACCGAGGTGCTATTTTCAGGCATCAATGAAGCGTTGAAGCTTGGCCAT
CGGATCTGCATTGCGACTCCGCGGACGGACGTTGTATTGGAGCTGGCGCCCCGTATTCAAAAAGTGTTTCCCTCTGCCGA
AGTCTCCGCACTGTATGGCGGCAGTGAAGACCGTCACCGATTTTCTCCCATCACGATTTCCACTACTCATCAACTCCTTC
GTTTTCACCATGCGTTCGACACGATGATTGTCGATGAAGTCGATGCTTTTCCATATACATTTGATGCAAGCCTGCAATGG
GCAGTAAAAAAATCGGCCAAGCCGGAAGCTGCGCGAATCTATTTGACCGCAACCCCGAGCAGGAAATGGCAGGATGAATG
CCGGTTTGGAAAGCGAAAATTCATTAAAATACCTGCCCGCTTTCACCGCAGGCCGCTGCCGCTGCCGCGATTTGCATGGT
GTGGAAATTGGCAGAAACGGCTGGAAAAGAGCCGGCTTCCCTATAATGTAATGGAGTGGACGGAAAATCGGCTGAAGCTC
GGAAAACAGGCGCTTATTTTTCTTCCGCATATTGAGCTGATGAAAAAATCCCTTTCCATTTTTCAGAAGCTGCATCCGGC
GATTGAATCCGTTCATGCGGAAGACCCGTTAAGGAAGGAAAAAGTAAAAAGAATGAGAGCGGGGGAGACACCGATTCTTC
TTACAACAACCATTTTGGAAAGGGGCGTCACTTTTCCAAATATAGATGTGGCAGTGCTTGGTGCAGAAGATGATATTTTT
ACTGAGGCTGCCCTTGTTCAAATTGCCGGCAGGGTGGGCAGAAGTTCGGAATACCCCTCAGGGGATATTACTTTTTTTCA
TTACGGCAGGACAAAAGCGATGATCCGGGCTTTGCTTCATATCGACCATATGAACAAGGAAGCGCAGAAGGCGGGGCTGC
TCGATGAATAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(32-181)

Helicase conserved C-terminal domain (Helicase_C)

(239-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.128

100

0.521
  comFA/cflA Streptococcus mitis SK321

42.432

98.404

0.418
  comFA/cflA Streptococcus mitis NCTC 12261

41.351

98.404

0.407
  comFA/cflA Streptococcus pneumoniae D39

41.081

98.404

0.404
  comFA/cflA Streptococcus pneumoniae Rx1

41.081

98.404

0.404
  comFA/cflA Streptococcus pneumoniae R6

41.081

98.404

0.404
  comFA/cflA Streptococcus pneumoniae TIGR4

40.811

98.404

0.402
  comFA Latilactobacillus sakei subsp. sakei 23K

42.197

92.021

0.388