Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QNH37_RS18345 Genome accession   NZ_CP126112
Coordinates   3837091..3838167 (-) Length   358 a.a.
NCBI ID   WP_283902835.1    Uniprot ID   -
Organism   Peribacillus simplex strain WH6     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3832091..3843167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH37_RS18305 (QNH37_18305) - 3832954..3833754 (+) 801 WP_283897366.1 YqhG family protein -
  QNH37_RS18310 (QNH37_18310) - 3833799..3833984 (-) 186 WP_063233067.1 YqzE family protein -
  QNH37_RS18315 (QNH37_18315) comGG 3834102..3834488 (-) 387 WP_283897370.1 competence type IV pilus minor pilin ComGG -
  QNH37_RS18320 (QNH37_18320) comGF 3834481..3834960 (-) 480 WP_283897372.1 competence type IV pilus minor pilin ComGF -
  QNH37_RS18325 (QNH37_18325) - 3834908..3835246 (-) 339 WP_283897374.1 hypothetical protein -
  QNH37_RS18330 (QNH37_18330) comGD 3835233..3835676 (-) 444 WP_098369818.1 competence type IV pilus minor pilin ComGD -
  QNH37_RS18335 (QNH37_18335) comGC 3835684..3835995 (-) 312 WP_063233178.1 competence type IV pilus major pilin ComGC -
  QNH37_RS18340 (QNH37_18340) comGB 3836073..3837107 (-) 1035 WP_283897377.1 competence type IV pilus assembly protein ComGB -
  QNH37_RS18345 (QNH37_18345) comGA 3837091..3838167 (-) 1077 WP_283902835.1 competence type IV pilus ATPase ComGA Machinery gene
  QNH37_RS18350 (QNH37_18350) - 3838269..3838649 (-) 381 WP_283897379.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  QNH37_RS18355 (QNH37_18355) - 3838862..3839563 (+) 702 WP_283897381.1 helix-turn-helix domain-containing protein -
  QNH37_RS18360 (QNH37_18360) - 3839649..3839891 (+) 243 WP_076365317.1 DUF2626 domain-containing protein -
  QNH37_RS18365 (QNH37_18365) - 3839943..3841043 (-) 1101 WP_283897383.1 SAM-dependent methyltransferase -
  QNH37_RS18370 (QNH37_18370) - 3841436..3842062 (-) 627 WP_283897384.1 MBL fold metallo-hydrolase -
  QNH37_RS18375 (QNH37_18375) - 3842297..3842470 (+) 174 WP_064505148.1 DUF2759 domain-containing protein -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 39860.51 Da        Isoelectric Point: 8.4675

>NTDB_id=836491 QNH37_RS18345 WP_283902835.1 3837091..3838167(-) (comGA) [Peribacillus simplex strain WH6]
MISIEKTAEKILTRAVQESASDIHIFFRREGPLIQFRIDNKLVPKETLSFFEAERLIAHLKFLASMDIGEKRRPQSGAIT
INLANQVVGLRLSTLPTAHLESLVIRLIPQQNILPLEQLSLFPSTVQKLIALLKHSHGMLIFTGPTGSGKTTTLYSLLHH
AHEMINRNIITLEDPIENVSEKVLQVQINEKAGITYSVGLKAVLRHDPDVIMVGEVRDAETAKIAVRAALTGHLILTTMH
TRDAQGAISRLMEFGVSLLEVEQSLIGVTAQRLVELRCLPCKGDCALACKMTARNKRASVYELLYGKSLAEVLRIMGDEK
GKATVSYRQLKDEIGKAVAMGYVDSEEYERLVYDETKK

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=836491 QNH37_RS18345 WP_283902835.1 3837091..3838167(-) (comGA) [Peribacillus simplex strain WH6]
TTGATATCGATTGAAAAGACCGCAGAAAAAATATTGACCCGTGCTGTACAGGAATCGGCATCCGATATCCACATTTTTTT
TCGCAGGGAGGGACCTCTCATCCAATTCAGGATAGACAATAAGCTTGTTCCAAAGGAAACATTATCATTCTTTGAAGCTG
AGAGGCTGATCGCTCATTTGAAGTTCCTTGCCTCGATGGATATAGGGGAGAAAAGGAGACCTCAGAGTGGTGCCATCACC
ATCAATTTGGCTAACCAGGTGGTCGGACTCCGCCTTTCCACTTTACCCACTGCCCATCTCGAAAGTTTGGTCATCCGCTT
AATACCCCAACAGAATATCCTTCCTCTAGAACAGTTATCCTTATTTCCAAGCACCGTTCAAAAATTGATTGCACTCCTGA
AGCATTCCCATGGCATGCTCATATTTACCGGTCCGACTGGCAGTGGAAAAACCACGACACTATATTCCCTGCTTCACCAT
GCCCATGAGATGATTAATCGAAATATTATTACACTTGAAGATCCCATTGAAAATGTATCCGAAAAGGTATTGCAAGTCCA
AATCAATGAAAAGGCGGGCATTACGTATTCTGTCGGTCTAAAAGCTGTTCTGAGACATGACCCTGACGTGATCATGGTTG
GGGAAGTCAGAGATGCAGAAACCGCCAAAATCGCAGTGCGTGCCGCATTGACCGGTCATTTGATACTTACAACCATGCAT
ACAAGGGACGCCCAGGGCGCTATCTCCAGGTTAATGGAATTTGGTGTCAGCTTGCTTGAGGTTGAACAGAGTTTGATTGG
CGTGACAGCACAGCGGCTGGTTGAATTGCGTTGTCTTCCATGTAAAGGGGACTGTGCTTTAGCTTGCAAAATGACTGCCA
GGAATAAAAGGGCAAGTGTATATGAATTGCTATATGGAAAAAGCCTGGCTGAGGTTCTCCGGATAATGGGAGATGAAAAA
GGAAAGGCAACGGTCAGCTACCGCCAATTGAAGGATGAAATCGGAAAAGCGGTTGCGATGGGTTATGTGGATTCCGAGGA
ATATGAACGGCTGGTATACGATGAAACCAAAAAGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

55.462

99.721

0.553
  pilB Haemophilus influenzae 86-028NP

38.506

97.207

0.374
  pilB Haemophilus influenzae Rd KW20

37.356

97.207

0.363