Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QNH17_RS29755 Genome accession   NZ_CP126107
Coordinates   6067969..6068490 (-) Length   173 a.a.
NCBI ID   WP_283876866.1    Uniprot ID   -
Organism   Neobacillus sp. SuZ13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6062969..6073490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH17_RS29735 (QNH17_29735) rplI 6064164..6064613 (-) 450 WP_144552062.1 50S ribosomal protein L9 -
  QNH17_RS29740 (QNH17_29740) - 6064610..6066583 (-) 1974 WP_283876864.1 DHH family phosphoesterase -
  QNH17_RS29745 (QNH17_29745) - 6066609..6067553 (-) 945 WP_283876865.1 YybS family protein -
  QNH17_RS29750 (QNH17_29750) rpsR 6067679..6067918 (-) 240 WP_098577061.1 30S ribosomal protein S18 -
  QNH17_RS29755 (QNH17_29755) ssbA 6067969..6068490 (-) 522 WP_283876866.1 single-stranded DNA-binding protein Machinery gene
  QNH17_RS29760 (QNH17_29760) rpsF 6068554..6068841 (-) 288 WP_026568065.1 30S ribosomal protein S6 -
  QNH17_RS29765 (QNH17_29765) ychF 6069008..6070108 (-) 1101 WP_283876867.1 redox-regulated ATPase YchF -
  QNH17_RS29770 (QNH17_29770) - 6070421..6072418 (-) 1998 WP_283876868.1 molybdopterin-dependent oxidoreductase -
  QNH17_RS29775 (QNH17_29775) - 6072640..6072837 (-) 198 WP_026568062.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19045.91 Da        Isoelectric Point: 4.9994

>NTDB_id=836320 QNH17_RS29755 WP_283876866.1 6067969..6068490(-) (ssbA) [Neobacillus sp. SuZ13]
MMNRVVLVGRLTKDPDLRYTPNGVPVATFTLAVNRPFSSQSGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRIQTR
NYEGQDGKRVYVTEVQAESVQFLEPRNASGGGGGRSDYDQFGAPPREPQGNPYGGGNQNQRQNQNTNKGYTRMDEDPFAG
NGQIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=836320 QNH17_RS29755 WP_283876866.1 6067969..6068490(-) (ssbA) [Neobacillus sp. SuZ13]
ATGATGAATCGTGTCGTACTTGTTGGCCGTTTAACAAAAGATCCTGATTTGCGTTATACACCAAATGGGGTCCCTGTTGC
TACCTTTACTCTAGCTGTTAATCGACCATTTTCTAGTCAATCAGGTGAACGTGAAGCAGACTTTATTAACTGTGTTGTTT
GGCGTAAACCTGCTGAAAATGTAGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGTGTGGATGGCCGAATTCAAACCCGC
AACTATGAAGGACAAGATGGTAAACGTGTCTATGTTACAGAGGTACAAGCTGAAAGTGTTCAGTTCTTAGAACCTAGAAA
CGCATCTGGCGGCGGTGGCGGAAGAAGCGATTACGATCAATTCGGTGCTCCTCCGAGGGAACCACAAGGTAATCCTTATG
GAGGCGGCAATCAGAATCAACGTCAAAATCAAAACACGAATAAAGGTTACACAAGAATGGACGAGGATCCGTTTGCTGGT
AATGGTCAGATTGATATTTCCGATGACGACCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

66.102

100

0.676
  ssb Latilactobacillus sakei subsp. sakei 23K

54.19

100

0.561
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

61.272

0.387