Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   QNH17_RS21780 Genome accession   NZ_CP126107
Coordinates   4407933..4408244 (+) Length   103 a.a.
NCBI ID   WP_283879569.1    Uniprot ID   A0AA95S816
Organism   Neobacillus sp. SuZ13     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4402933..4413244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH17_RS21760 (QNH17_21760) - 4403201..4404889 (+) 1689 WP_283875095.1 SNF2-related protein -
  QNH17_RS21765 (QNH17_21765) - 4404867..4405658 (+) 792 WP_283875096.1 YqhG family protein -
  QNH17_RS21770 (QNH17_21770) comGA 4405809..4406891 (+) 1083 WP_283875097.1 competence type IV pilus ATPase ComGA Machinery gene
  QNH17_RS21775 (QNH17_21775) comGB 4406878..4407909 (+) 1032 WP_283875098.1 competence type IV pilus assembly protein ComGB -
  QNH17_RS21780 (QNH17_21780) comGC 4407933..4408244 (+) 312 WP_283879569.1 competence type IV pilus major pilin ComGC Machinery gene
  QNH17_RS21785 (QNH17_21785) comGD 4408251..4408685 (+) 435 WP_283875099.1 competence type IV pilus minor pilin ComGD -
  QNH17_RS21790 (QNH17_21790) - 4408675..4409013 (+) 339 WP_283875100.1 hypothetical protein -
  QNH17_RS21795 (QNH17_21795) comGF 4408961..4409437 (+) 477 WP_283875101.1 competence type IV pilus minor pilin ComGF -
  QNH17_RS21800 (QNH17_21800) comGG 4409434..4409820 (+) 387 WP_283875102.1 competence type IV pilus minor pilin ComGG -
  QNH17_RS21805 (QNH17_21805) - 4409870..4410055 (+) 186 WP_283875103.1 YqzE family protein -
  QNH17_RS21810 (QNH17_21810) - 4410274..4410972 (+) 699 WP_283879570.1 helix-turn-helix domain-containing protein -
  QNH17_RS21815 (QNH17_21815) - 4411056..4411298 (+) 243 WP_088088969.1 DUF2626 domain-containing protein -
  QNH17_RS21820 (QNH17_21820) - 4411343..4412434 (-) 1092 WP_283875104.1 SAM-dependent methyltransferase -
  QNH17_RS21825 (QNH17_21825) - 4412598..4413233 (-) 636 WP_283875105.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 11297.22 Da        Isoelectric Point: 5.8341

>NTDB_id=836301 QNH17_RS21780 WP_283879569.1 4407933..4408244(+) (comGC) [Neobacillus sp. SuZ13]
MKNEKGFTLIEMMIVMLVISVLLIITIPNVAKHNSNINKKGCEAYVKMVQAQVQAYEMDKNKIPTIEELKAEGYLKQDAT
GCPNGNEVAIDAEGNVTSVAKVN

Nucleotide


Download         Length: 312 bp        

>NTDB_id=836301 QNH17_RS21780 WP_283879569.1 4407933..4408244(+) (comGC) [Neobacillus sp. SuZ13]
ATGAAAAATGAAAAAGGTTTTACATTAATAGAAATGATGATTGTTATGCTAGTAATCTCAGTGCTGTTAATTATTACAAT
TCCTAACGTCGCCAAACATAATTCAAATATCAACAAGAAAGGTTGTGAGGCCTACGTTAAAATGGTCCAAGCTCAAGTTC
AAGCATATGAAATGGATAAGAACAAGATCCCTACGATTGAAGAACTAAAAGCAGAAGGATATTTAAAGCAAGATGCTACT
GGTTGTCCGAATGGTAACGAAGTTGCAATAGATGCTGAAGGTAATGTAACCTCAGTTGCAAAGGTAAACTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

56.18

86.408

0.485
  comGC Staphylococcus aureus MW2

44.565

89.32

0.398
  comGC Staphylococcus aureus N315

44.565

89.32

0.398