Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QNH43_RS18155 Genome accession   NZ_CP126106
Coordinates   3842086..3843162 (-) Length   358 a.a.
NCBI ID   WP_283918394.1    Uniprot ID   -
Organism   Peribacillus simplex strain RZ14     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3837086..3848162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH43_RS18115 (QNH43_18115) - 3837947..3838747 (+) 801 WP_283915159.1 YqhG family protein -
  QNH43_RS18120 (QNH43_18120) - 3838794..3838979 (-) 186 WP_063233067.1 YqzE family protein -
  QNH43_RS18125 (QNH43_18125) comGG 3839097..3839483 (-) 387 WP_283915160.1 competence type IV pilus minor pilin ComGG -
  QNH43_RS18130 (QNH43_18130) - 3839476..3839808 (-) 333 WP_283915161.1 ComGF family competence protein -
  QNH43_RS18135 (QNH43_18135) - 3839903..3840241 (-) 339 WP_283915162.1 hypothetical protein -
  QNH43_RS18140 (QNH43_18140) comGD 3840228..3840671 (-) 444 WP_283915163.1 competence type IV pilus minor pilin ComGD -
  QNH43_RS18145 (QNH43_18145) comGC 3840679..3840978 (-) 300 WP_283918393.1 competence type IV pilus major pilin ComGC Machinery gene
  QNH43_RS18150 (QNH43_18150) comGB 3841068..3842102 (-) 1035 WP_283915164.1 competence type IV pilus assembly protein ComGB -
  QNH43_RS18155 (QNH43_18155) comGA 3842086..3843162 (-) 1077 WP_283918394.1 competence type IV pilus ATPase ComGA Machinery gene
  QNH43_RS18160 (QNH43_18160) - 3843264..3843644 (-) 381 WP_283915165.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  QNH43_RS18165 (QNH43_18165) - 3843857..3844558 (+) 702 WP_283915166.1 helix-turn-helix domain-containing protein -
  QNH43_RS18170 (QNH43_18170) - 3844644..3844886 (+) 243 WP_076365317.1 DUF2626 domain-containing protein -
  QNH43_RS18175 (QNH43_18175) - 3844939..3846039 (-) 1101 WP_283915167.1 SAM-dependent methyltransferase -
  QNH43_RS18180 (QNH43_18180) - 3846405..3847031 (-) 627 WP_076365315.1 MBL fold metallo-hydrolase -
  QNH43_RS18185 (QNH43_18185) - 3847266..3847439 (+) 174 WP_064505148.1 DUF2759 domain-containing protein -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 39873.53 Da        Isoelectric Point: 8.7550

>NTDB_id=836241 QNH43_RS18155 WP_283918394.1 3842086..3843162(-) (comGA) [Peribacillus simplex strain RZ14]
MISIEKTAEKILTRAVQESASDIHIFFRREGPLIQFRIDNKLVPKETLSFFEAERLIAHLKFLASMDIGEKRRPQSGAIT
INLANQVVGLRLSTLPTAHLESLVIRLIPQQNILPLEQLSLFPSTVQKLIALLKHSHGMLIFTGPTGSGKTTTLYSLLHH
AQEMINRNIITLEDPIENVSEKVLQVQINEKAGITYSVGLKAVLRHDPDVIMVGEVRDAETAKIAVRAALTGHLILTTMH
TRDAQGAISRLLEFGVSLLEVEQSLIGVTAQRLVELRCLACKGDCALPCKMTARNKRASVYELLYGRSLAEVLRIMGDER
GEATVSYRQLKDEIGKAVAMGYVDSKEYERLVYVETKK

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=836241 QNH43_RS18155 WP_283918394.1 3842086..3843162(-) (comGA) [Peribacillus simplex strain RZ14]
TTGATATCGATTGAAAAGACCGCAGAAAAAATACTGACCCGTGCTGTACAGGAATCGGCATCGGATATTCACATTTTTTT
TCGCAGGGAGGGACCTCTCATCCAATTCAGGATAGATAATAAGCTTGTTCCAAAGGAAACATTATCATTCTTTGAAGCTG
AGAGGCTGATCGCTCATTTAAAGTTCCTGGCCTCGATGGATATAGGGGAGAAAAGGAGGCCCCAGAGTGGTGCCATCACC
ATCAATTTGGCTAACCAGGTGGTCGGACTCCGCCTTTCCACTTTACCCACTGCCCATCTCGAAAGCTTGGTCATCCGCTT
AATACCCCAACAGAATATCCTTCCTCTAGAACAGTTATCCTTATTTCCAAGCACCGTTCAAAAATTGATTGCACTCCTTA
AGCATTCCCATGGCATGCTGATATTTACCGGTCCGACTGGCAGTGGAAAAACCACTACACTATATTCCCTGCTTCACCAT
GCCCAAGAGATGATCAATCGAAATATTATTACACTTGAAGATCCAATTGAAAATGTATCCGAAAAGGTATTGCAAGTCCA
AATCAATGAAAAGGCGGGCATTACGTATTCTGTCGGACTAAAAGCTGTTCTGAGGCATGACCCTGACGTGATCATGGTTG
GGGAAGTCAGAGATGCAGAAACCGCCAAAATCGCAGTGCGTGCCGCATTGACCGGTCATTTGATACTTACAACCATGCAT
ACAAGGGACGCCCAGGGCGCCATCTCCAGGTTACTGGAATTTGGTGTGAGCTTGCTTGAGGTTGAACAGAGTTTGATTGG
CGTGACAGCACAGCGGCTGGTTGAATTGCGTTGCCTTGCATGTAAAGGGGACTGTGCTTTACCTTGCAAAATGACTGCCA
GGAATAAAAGGGCAAGTGTATATGAATTGCTATATGGAAGAAGCCTGGCCGAGGTTCTCCGGATAATGGGAGATGAAAGA
GGAGAGGCAACGGTAAGCTACCGCCAATTGAAGGATGAAATCGGAAAGGCGGTTGCGATGGGTTATGTGGATTCCAAGGA
ATACGAACGGCTGGTATACGTTGAAACCAAAAAGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

55.182

99.721

0.55
  pilB Haemophilus influenzae 86-028NP

38.793

97.207

0.377
  pilB Haemophilus influenzae Rd KW20

37.644

97.207

0.366