Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   QNH19_RS01980 Genome accession   NZ_CP126104
Coordinates   390564..391712 (+) Length   382 a.a.
NCBI ID   WP_283887753.1    Uniprot ID   -
Organism   Bacillus velezensis strain MB7_B11     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 385564..396712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH19_RS01960 (QNH19_01960) - 385964..386647 (-) 684 WP_283887748.1 ABC transporter ATP-binding protein -
  QNH19_RS01965 (QNH19_01965) - 386662..388095 (-) 1434 WP_283887750.1 ABC transporter permease -
  QNH19_RS01970 (QNH19_01970) - 388308..388991 (+) 684 WP_160242544.1 response regulator transcription factor -
  QNH19_RS01975 (QNH19_01975) - 388978..390411 (+) 1434 WP_162492834.1 HAMP domain-containing sensor histidine kinase -
  QNH19_RS01980 (QNH19_01980) rapC 390564..391712 (+) 1149 WP_283887753.1 tetratricopeptide repeat protein Regulator
  QNH19_RS01985 (QNH19_01985) phrC 391696..391815 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  QNH19_RS01990 (QNH19_01990) - 391964..392059 (-) 96 WP_012116800.1 YjcZ family sporulation protein -
  QNH19_RS01995 (QNH19_01995) - 392154..393518 (-) 1365 WP_136396097.1 aspartate kinase -
  QNH19_RS02000 (QNH19_02000) ceuB 393932..394885 (+) 954 WP_059366593.1 ABC transporter permease Machinery gene
  QNH19_RS02005 (QNH19_02005) - 394875..395822 (+) 948 WP_007410274.1 iron chelate uptake ABC transporter family permease subunit -
  QNH19_RS02010 (QNH19_02010) - 395816..396574 (+) 759 WP_063096189.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45422.66 Da        Isoelectric Point: 4.9220

>NTDB_id=836069 QNH19_RS01980 WP_283887753.1 390564..391712(+) (rapC) [Bacillus velezensis strain MB7_B11]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERCFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=836069 QNH19_RS01980 WP_283887753.1 390564..391712(+) (rapC) [Bacillus velezensis strain MB7_B11]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGTGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCATACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGTGCTTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(264-294)

Tetratricopeptide repeat (TPR_12)

(193-254)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

82.461

100

0.825
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568