Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   QNH24_RS08605 Genome accession   NZ_CP126101
Coordinates   1813683..1814396 (-) Length   237 a.a.
NCBI ID   WP_283871641.1    Uniprot ID   A0AAX3WZI9
Organism   Lysinibacillus pakistanensis strain LY1     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1808683..1819396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH24_RS08590 (QNH24_08590) - 1809949..1811469 (+) 1521 WP_283871638.1 succinate CoA transferase -
  QNH24_RS08595 (QNH24_08595) - 1811558..1812067 (+) 510 WP_283871639.1 YfiT family bacillithiol transferase -
  QNH24_RS08600 (QNH24_08600) - 1812267..1813682 (-) 1416 WP_283871640.1 HAMP domain-containing sensor histidine kinase -
  QNH24_RS08605 (QNH24_08605) scnR 1813683..1814396 (-) 714 WP_283871641.1 response regulator transcription factor Regulator
  QNH24_RS08610 (QNH24_08610) - 1814498..1814848 (-) 351 WP_283871642.1 YxeA family protein -
  QNH24_RS08615 (QNH24_08615) - 1814868..1815599 (-) 732 WP_283871643.1 ABC transporter permease -
  QNH24_RS08620 (QNH24_08620) - 1815612..1816364 (-) 753 WP_283871644.1 ABC transporter permease -
  QNH24_RS08625 (QNH24_08625) - 1816361..1817278 (-) 918 WP_283871645.1 ABC transporter ATP-binding protein -
  QNH24_RS08630 (QNH24_08630) - 1817727..1818170 (+) 444 WP_283871646.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26944.26 Da        Isoelectric Point: 4.8270

>NTDB_id=835945 QNH24_RS08605 WP_283871641.1 1813683..1814396(-) (scnR) [Lysinibacillus pakistanensis strain LY1]
MENLKEKKILIVDDELEMIIMIEKFLRKEGFFRIYTAADFASALSICRTVKPDIAILDVMLPDGDGFSLLTSIRQFSEIP
VLFLSARGEDEDRLLGLGLGADDYIVKPFLPRELVLRLTAILKRVYSSPVTEDSAVFRLEDLIIDLDSAVVQRNQEEIPL
TAKEHAILQKLYNNNGKIVTSDALCQAVWGDDSYGYENTLMVHMRRIREKIEQDPSKPTHLLTVRGLGYKLLLKETN

Nucleotide


Download         Length: 714 bp        

>NTDB_id=835945 QNH24_RS08605 WP_283871641.1 1813683..1814396(-) (scnR) [Lysinibacillus pakistanensis strain LY1]
TTGGAGAATTTAAAAGAAAAAAAGATATTAATTGTAGATGATGAATTGGAAATGATAATAATGATTGAGAAATTTTTACG
AAAAGAGGGCTTTTTTCGTATATATACTGCTGCCGATTTTGCCTCAGCTTTGTCGATTTGCCGAACAGTTAAGCCTGATA
TTGCGATTCTCGATGTTATGCTACCTGATGGTGATGGATTCTCACTTCTAACCTCTATTAGGCAGTTCTCTGAGATACCA
GTGCTTTTTCTTTCTGCTCGAGGTGAGGATGAAGACCGATTACTAGGACTGGGTTTAGGGGCAGATGATTATATTGTAAA
GCCCTTCCTGCCCCGTGAATTGGTTTTACGACTGACAGCAATTCTAAAAAGAGTCTATTCCTCTCCAGTAACAGAAGATT
CAGCTGTCTTTCGATTGGAGGATCTAATCATTGATTTAGATAGCGCTGTTGTACAAAGAAATCAAGAAGAAATACCTTTG
ACAGCAAAGGAACATGCAATCCTTCAAAAGTTGTACAATAATAACGGGAAAATTGTCACTAGTGATGCCTTATGCCAGGC
TGTCTGGGGAGACGACAGCTACGGTTACGAAAATACATTAATGGTTCATATGAGACGGATTCGTGAAAAAATTGAGCAAG
ATCCCTCTAAACCAACCCATCTTCTCACAGTTAGGGGCTTAGGATATAAATTACTACTGAAGGAGACAAATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.655

96.624

0.489
  vicR Streptococcus mutans UA159

41.991

97.468

0.409
  micA Streptococcus pneumoniae Cp1015

41.739

97.046

0.405