Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QNK06_RS13185 Genome accession   NZ_CP126097
Coordinates   2510331..2510666 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain KF24     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2505331..2515666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK06_RS13165 (QNK06_13165) gcvT 2505922..2507010 (-) 1089 WP_283933554.1 glycine cleavage system aminomethyltransferase GcvT -
  QNK06_RS13170 (QNK06_13170) yqhH 2507452..2509125 (+) 1674 WP_169037820.1 SNF2-related protein -
  QNK06_RS13175 (QNK06_13175) yqhG 2509146..2509940 (+) 795 WP_032726154.1 YqhG family protein -
  QNK06_RS13180 (QNK06_13180) sinI 2510124..2510297 (+) 174 WP_014477323.1 anti-repressor SinI Regulator
  QNK06_RS13185 (QNK06_13185) sinR 2510331..2510666 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  QNK06_RS13190 (QNK06_13190) tasA 2510758..2511543 (-) 786 WP_014477324.1 biofilm matrix protein TasA -
  QNK06_RS13195 (QNK06_13195) sipW 2511608..2512180 (-) 573 WP_003230181.1 signal peptidase I SipW -
  QNK06_RS13200 (QNK06_13200) tapA 2512164..2512925 (-) 762 WP_283933555.1 amyloid fiber anchoring/assembly protein TapA -
  QNK06_RS13205 (QNK06_13205) yqzG 2513197..2513523 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  QNK06_RS13210 (QNK06_13210) spoIIT 2513565..2513744 (-) 180 WP_014480252.1 YqzE family protein -
  QNK06_RS13215 (QNK06_13215) comGG 2513815..2514189 (-) 375 WP_283933556.1 ComG operon protein ComGG Machinery gene
  QNK06_RS13220 (QNK06_13220) comGF 2514190..2514573 (-) 384 WP_283933557.1 ComG operon protein ComGF Machinery gene
  QNK06_RS13225 (QNK06_13225) comGE 2514599..2514946 (-) 348 WP_283933558.1 ComG operon protein 5 Machinery gene
  QNK06_RS13230 (QNK06_13230) comGD 2514930..2515361 (-) 432 WP_283933559.1 comG operon protein ComGD Machinery gene
  QNK06_RS13235 (QNK06_13235) comGC 2515351..2515647 (-) 297 WP_014477332.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=835716 QNK06_RS13185 WP_003226345.1 2510331..2510666(+) (sinR) [Bacillus subtilis strain KF24]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=835716 QNK06_RS13185 WP_003226345.1 2510331..2510666(+) (sinR) [Bacillus subtilis strain KF24]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCAATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1