Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   QNH34_RS16955 Genome accession   NZ_CP126096
Coordinates   3255782..3256471 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus altitudinis strain G6S2     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3250782..3261471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH34_RS16920 (QNH34_16920) - 3250866..3251348 (-) 483 WP_039169793.1 flagellar protein FlgN -
  QNH34_RS16925 (QNH34_16925) flgM 3251367..3251630 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  QNH34_RS16930 (QNH34_16930) - 3251710..3252129 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  QNH34_RS16935 (QNH34_16935) comFC 3252186..3252872 (-) 687 WP_176544677.1 ComF family protein Machinery gene
  QNH34_RS16940 (QNH34_16940) - 3252869..3253162 (-) 294 WP_008348267.1 competence protein ComFB -
  QNH34_RS16945 (QNH34_16945) comFA 3253227..3254354 (-) 1128 WP_045033977.1 DEAD/DEAH box helicase Machinery gene
  QNH34_RS16950 (QNH34_16950) - 3254728..3255570 (-) 843 WP_024719242.1 DegV family protein -
  QNH34_RS16955 (QNH34_16955) degU 3255782..3256471 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  QNH34_RS16960 (QNH34_16960) degS 3256536..3257711 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  QNH34_RS16965 (QNH34_16965) - 3257933..3258601 (+) 669 WP_017357860.1 YigZ family protein -
  QNH34_RS16970 (QNH34_16970) - 3258586..3259683 (+) 1098 WP_007499958.1 LCP family protein -
  QNH34_RS16975 (QNH34_16975) - 3259722..3260789 (-) 1068 WP_024719245.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=835668 QNH34_RS16955 WP_008348273.1 3255782..3256471(-) (degU) [Bacillus altitudinis strain G6S2]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=835668 QNH34_RS16955 WP_008348273.1 3255782..3256471(-) (degU) [Bacillus altitudinis strain G6S2]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATTTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATCTTGCAAAAAATGAATGTAAACGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996