Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QNH29_RS30190 Genome accession   NZ_CP126093
Coordinates   6122246..6122773 (-) Length   175 a.a.
NCBI ID   WP_283862908.1    Uniprot ID   A0AA95RKP6
Organism   Neobacillus sp. DY30     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6117246..6127773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH29_RS30170 (QNH29_30170) rplI 6118403..6118852 (-) 450 WP_283862905.1 50S ribosomal protein L9 -
  QNH29_RS30175 (QNH29_30175) - 6118849..6120822 (-) 1974 WP_283862906.1 DHH family phosphoesterase -
  QNH29_RS30180 (QNH29_30180) - 6120848..6121792 (-) 945 WP_283862907.1 YybS family protein -
  QNH29_RS30185 (QNH29_30185) rpsR 6121957..6122199 (-) 243 WP_063255175.1 30S ribosomal protein S18 -
  QNH29_RS30190 (QNH29_30190) ssbA 6122246..6122773 (-) 528 WP_283862908.1 single-stranded DNA-binding protein Machinery gene
  QNH29_RS30195 (QNH29_30195) rpsF 6122840..6123127 (-) 288 WP_192654794.1 30S ribosomal protein S6 -
  QNH29_RS30200 (QNH29_30200) ychF 6123307..6124407 (-) 1101 WP_283862909.1 redox-regulated ATPase YchF -
  QNH29_RS30205 (QNH29_30205) - 6124539..6126536 (-) 1998 WP_283862910.1 molybdopterin-dependent oxidoreductase -
  QNH29_RS30210 (QNH29_30210) - 6126607..6126804 (-) 198 WP_045519309.1 DUF951 domain-containing protein -
  QNH29_RS30215 (QNH29_30215) - 6126820..6127704 (-) 885 WP_283862911.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19188.05 Da        Isoelectric Point: 4.9902

>NTDB_id=835500 QNH29_RS30190 WP_283862908.1 6122246..6122773(-) (ssbA) [Neobacillus sp. DY30]
MMNRVVLVGRLTKDPDLRYTPNGVPVATFTLAVNRPFSSQAGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRIQTR
NYEGQDGKRVYVTEVQAESVQFLEPKNASGGGGGRSDNDYFGAPPREPQGNPYGGGNQNQRQYQNNNNNKGFTKVDDDPF
AGNGQIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=835500 QNH29_RS30190 WP_283862908.1 6122246..6122773(-) (ssbA) [Neobacillus sp. DY30]
ATGATGAATCGTGTCGTGCTTGTTGGCCGTTTAACAAAAGATCCTGATTTGCGTTATACACCAAATGGGGTTCCTGTAGC
TACCTTTACTTTAGCAGTTAACCGCCCGTTTTCTAGTCAGGCAGGTGAGCGTGAAGCAGACTTTATCAATTGTGTTGTTT
GGCGAAAACCTGCTGAAAATGTGGCAAACTTCTTGAAAAAAGGTAGTCTTGCAGGAGTAGATGGCCGCATTCAAACCCGC
AACTATGAAGGACAAGATGGTAAGCGTGTTTACGTTACTGAAGTTCAGGCAGAAAGTGTTCAGTTTCTTGAACCGAAAAA
TGCATCTGGCGGCGGTGGCGGAAGAAGCGACAATGATTACTTCGGTGCACCACCAAGGGAACCTCAAGGAAACCCTTATG
GCGGCGGCAATCAGAATCAACGACAATACCAAAACAATAACAATAATAAAGGTTTTACAAAAGTGGATGATGATCCGTTC
GCAGGTAACGGTCAGATAGACATCTCCGATGATGATCTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

66.48

100

0.68
  ssb Latilactobacillus sakei subsp. sakei 23K

52.381

100

0.566
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

60.571

0.383