NTDB

Overview

Name	comFC	Type	Machinery gene
Locus tag	QNH21_RS16685	Genome accession	NZ_CP126090
Coordinates	3247990..3248646 (-)	Length	218 a.a.
NCBI ID	WP_347343004.1	Uniprot ID	-
Organism	Bacillus safensis strain CEW AP102
Function	ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3242990..3253646

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QNH21_RS16650 (QNH21_16650)	fliW	3243128..3243562 (-)	435	WP_024423615.1	flagellar assembly protein FliW	-
QNH21_RS16655 (QNH21_16655)	-	3243591..3244169 (-)	579	WP_024426253.1	DUF6470 family protein	-
QNH21_RS16660 (QNH21_16660)	flgL	3244216..3245124 (-)	909	WP_024423617.1	flagellar hook-associated protein FlgL	-
QNH21_RS16665 (QNH21_16665)	flgK	3245134..3246654 (-)	1521	WP_024423618.1	flagellar hook-associated protein FlgK	-
QNH21_RS16670 (QNH21_16670)	-	3246670..3247152 (-)	483	WP_103131678.1	flagellar protein FlgN	-
QNH21_RS16675 (QNH21_16675)	flgM	3247171..3247434 (-)	264	WP_024423620.1	flagellar biosynthesis anti-sigma factor FlgM	-
QNH21_RS16680 (QNH21_16680)	-	3247514..3247933 (-)	420	WP_024423621.1	TIGR03826 family flagellar region protein	-
QNH21_RS16685 (QNH21_16685)	comFC	3247990..3248646 (-)	657	WP_347343004.1	ComF family protein	Machinery gene
QNH21_RS16690 (QNH21_16690)	-	3248673..3248966 (-)	294	WP_024423623.1	competence protein ComFB	-
QNH21_RS16695 (QNH21_16695)	comFA	3249015..3250412 (-)	1398	WP_283860161.1	DEAD/DEAH box helicase	Machinery gene
QNH21_RS16700 (QNH21_16700)	-	3250533..3251375 (-)	843	WP_024423625.1	DegV family protein	-
QNH21_RS16705 (QNH21_16705)	degU	3251590..3252279 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
QNH21_RS16710 (QNH21_16710)	degS	3252344..3253519 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator

Sequence

Protein

Download Length: 218 a.a. Molecular weight: 25037.25 Da Isoelectric Point: 10.0127

                                >NTDB_id=835316 QNH21_RS16685 WP_347343004.1 3247990..3248646(-) (comFC) [Bacillus safensis strain CEW AP102]

MPAFTWKSFLLLNDDRLCVACKNHLVKIERPICPTCGREQSNDQLCQDCNRWIERSDSIKILVKNRSVYTYNELMKDVLA

RFKFRGDTALAELFKKDVQAAFKHSFCIKDPLLIPIPLSHERLKERGFNQSVKIASLLDKPILQPLVKIHQSKQSKKKKN

ERLDQKGLFQIKQTDAIVQRDIILVDDIYTTGATIYDAARILKDAGAKSVSSFTLIRS

Nucleotide

Download Length: 657 bp

                                >NTDB_id=835316 QNH21_RS16685 WP_347343004.1 3247990..3248646(-) (comFC) [Bacillus safensis strain CEW AP102]

GTGCCTGCTTTTACATGGAAATCATTCCTACTATTAAATGATGATCGCCTTTGTGTAGCATGTAAGAATCACTTAGTAAA

GATTGAGCGTCCTATTTGTCCAACATGCGGAAGGGAGCAGTCAAATGACCAATTGTGCCAGGACTGTAACAGATGGATTG

AACGCTCTGATTCTATTAAAATCCTTGTGAAAAATAGGTCAGTTTATACTTACAACGAGTTGATGAAAGATGTCCTTGCC

CGCTTTAAATTTCGGGGTGATACGGCTTTAGCTGAGCTGTTTAAAAAAGATGTACAAGCAGCATTTAAACATTCCTTCTG

CATAAAAGACCCATTGCTGATACCGATTCCTTTAAGTCATGAAAGACTAAAAGAAAGAGGATTTAATCAGTCTGTGAAAA

TCGCTTCTTTGCTAGATAAGCCAATATTGCAGCCACTCGTGAAAATACATCAAAGTAAGCAGTCTAAAAAAAAGAAAAAT

GAACGCCTAGATCAAAAAGGATTGTTTCAAATAAAGCAAACAGATGCGATTGTTCAAAGGGATATTATATTAGTTGATGA

TATCTATACAACGGGAGCAACCATCTATGATGCGGCAAGAATTTTGAAAGACGCAGGTGCTAAAAGTGTTTCTTCTTTTA

CGTTGATACGTAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(127-216)

Double zinc ribbon domain (DZR_2)

(14-49)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comFC	Bacillus subtilis subsp. subtilis str. 168	50	99.083	0.495
comFC/cflB	Streptococcus pneumoniae Rx1	36.744	98.624	0.362
comFC/cflB	Streptococcus pneumoniae D39	36.744	98.624	0.362
comFC/cflB	Streptococcus pneumoniae R6	36.744	98.624	0.362
comFC/cflB	Streptococcus pneumoniae TIGR4	36.744	98.624	0.362

Detailed information NTG0835316