Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QNH26_RS16945 Genome accession   NZ_CP126089
Coordinates   3504213..3505289 (-) Length   358 a.a.
NCBI ID   WP_283930899.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain CF29     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3499213..3510289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH26_RS16905 (QNH26_16905) - 3500083..3500880 (+) 798 WP_048688306.1 YqhG family protein -
  QNH26_RS16910 (QNH26_16910) - 3500924..3501109 (-) 186 WP_057278811.1 YqzE family protein -
  QNH26_RS16915 (QNH26_16915) comGG 3501224..3501610 (-) 387 WP_283928867.1 competence type IV pilus minor pilin ComGG -
  QNH26_RS16920 (QNH26_16920) comGF 3501603..3502082 (-) 480 WP_082854575.1 competence type IV pilus minor pilin ComGF -
  QNH26_RS16925 (QNH26_16925) - 3502030..3502368 (-) 339 WP_106026884.1 hypothetical protein -
  QNH26_RS16930 (QNH26_16930) comGD 3502355..3502798 (-) 444 WP_034308382.1 competence type IV pilus minor pilin ComGD -
  QNH26_RS16935 (QNH26_16935) comGC 3502806..3503117 (-) 312 WP_283778890.1 competence type IV pilus major pilin ComGC -
  QNH26_RS16940 (QNH26_16940) comGB 3503195..3504229 (-) 1035 WP_283928868.1 competence type IV pilus assembly protein ComGB -
  QNH26_RS16945 (QNH26_16945) comGA 3504213..3505289 (-) 1077 WP_283930899.1 competence type IV pilus ATPase ComGA Machinery gene
  QNH26_RS16950 (QNH26_16950) - 3505615..3505860 (-) 246 Protein_3294 ATPase, T2SS/T4P/T4SS family -
  QNH26_RS16955 (QNH26_16955) - 3506237..3506551 (+) 315 WP_283928869.1 hypothetical protein -
  QNH26_RS16960 (QNH26_16960) - 3506535..3507056 (+) 522 WP_283928870.1 hypothetical protein -
  QNH26_RS16965 (QNH26_16965) - 3507126..3508550 (-) 1425 WP_283928871.1 collagen-like protein -
  QNH26_RS16970 (QNH26_16970) - 3509076..3509534 (+) 459 WP_283928872.1 hypothetical protein -
  QNH26_RS16975 (QNH26_16975) - 3509678..3510139 (-) 462 WP_283928873.1 ATPase, T2SS/T4P/T4SS family -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 39835.50 Da        Isoelectric Point: 8.1746

>NTDB_id=835234 QNH26_RS16945 WP_283930899.1 3504213..3505289(-) (comGA) [Peribacillus frigoritolerans strain CF29]
MISIEKTAEKILTRAIVESASDIHIFFRGEGPLIQFRIDNRLVPQETLSFFEAERLIAHLKFLASMDIGEKRRPQSGAIT
INLANQVVGLRLSTLPTAHLESLVIRLIPQQNILPLEQLSLFPNTVQKLIALLKHSHGMLIFTGPTGSGKTTTLYSLLHH
AHEMINRNIITLEDPIENVSEKVLQVQINEKAGITYSVGLKAVLRHDPDVIMVGEVRDAETAKIAVRAALTGHLILTTMH
TRDAQGAISRLLEFGVSLLEVEQTLIGVTAQRLVELRCLPCKGDCALACKMTARNKRASVYELLYGKSLAEVLRIMGDEK
EMATVSYRQLKDEIGKAVAMGYVGSQEYERLVYHETKK

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=835234 QNH26_RS16945 WP_283930899.1 3504213..3505289(-) (comGA) [Peribacillus frigoritolerans strain CF29]
TTGATATCGATAGAAAAGACCGCAGAAAAAATACTAACCCGTGCCATCGTGGAATCGGCATCGGATATCCACATTTTTTT
TCGCGGAGAGGGGCCTCTCATCCAATTCAGGATAGACAATAGGCTTGTTCCCCAGGAAACATTATCATTCTTTGAAGCTG
AAAGGCTGATCGCTCATTTGAAGTTCCTTGCCTCGATGGATATAGGGGAGAAAAGAAGGCCCCAGAGTGGTGCCATCACC
ATCAATTTGGCTAACCAGGTGGTCGGACTCCGCCTTTCCACTTTACCCACTGCCCATCTCGAAAGTTTGGTCATCCGCTT
AATACCTCAACAGAATATCCTTCCTCTAGAACAGTTATCCTTATTTCCAAACACCGTTCAAAAATTGATTGCACTCCTGA
AGCATTCCCATGGCATGCTCATATTTACCGGCCCGACTGGCAGTGGGAAAACAACGACACTATATTCCCTGCTTCACCAC
GCCCACGAGATGATCAATCGAAATATCATTACACTTGAAGATCCCATTGAAAATGTATCCGAAAAGGTATTGCAAGTCCA
AATCAATGAAAAGGCGGGCATTACGTATTCAGTCGGCCTAAAAGCTGTTCTGAGACATGACCCGGACGTGATCATGGTTG
GGGAAGTCAGGGATGCAGAAACTGCCAAAATCGCAGTCCGTGCCGCATTAACCGGTCATTTGATACTAACGACCATGCAT
ACGAGGGACGCCCAGGGCGCCATCTCCAGATTACTGGAATTTGGTGTCAGCTTACTTGAGGTTGAACAGACTTTGATTGG
CGTGACAGCGCAGCGGCTGGTTGAATTGCGATGTCTTCCGTGTAAAGGGGACTGTGCTTTAGCTTGCAAAATGACTGCAA
GGAATAAAAGGGCAAGTGTATATGAATTGCTATATGGAAAAAGCCTGGCTGAAGTTCTCCGGATAATGGGAGATGAAAAA
GAAATGGCAACGGTCAGCTACCGCCAATTAAAGGATGAAATCGGAAAAGCGGTTGCGATGGGCTATGTGGGATCTCAGGA
ATATGAACGGCTGGTCTACCATGAAACCAAAAAGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

55.899

99.441

0.556
  pilB Haemophilus influenzae 86-028NP

37.644

97.207

0.366
  pilB Haemophilus influenzae Rd KW20

38.806

93.575

0.363