Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   QNH25_RS16715 Genome accession   NZ_CP126087
Coordinates   3255759..3256448 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus safensis strain CEW-AP100     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3250759..3261448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH25_RS16680 (QNH25_16680) - 3250839..3251321 (-) 483 WP_103131678.1 flagellar protein FlgN -
  QNH25_RS16685 (QNH25_16685) flgM 3251340..3251603 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  QNH25_RS16690 (QNH25_16690) - 3251683..3252102 (-) 420 WP_024423621.1 TIGR03826 family flagellar region protein -
  QNH25_RS16695 (QNH25_16695) comFC 3252159..3252815 (-) 657 WP_347343004.1 ComF family protein Machinery gene
  QNH25_RS16700 (QNH25_16700) - 3252842..3253135 (-) 294 WP_024423623.1 competence protein ComFB -
  QNH25_RS16705 (QNH25_16705) comFA 3253184..3254581 (-) 1398 WP_283860161.1 DEAD/DEAH box helicase Machinery gene
  QNH25_RS16710 (QNH25_16710) - 3254702..3255544 (-) 843 WP_024423625.1 DegV family protein -
  QNH25_RS16715 (QNH25_16715) degU 3255759..3256448 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  QNH25_RS16720 (QNH25_16720) degS 3256513..3257688 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  QNH25_RS16725 (QNH25_16725) - 3257910..3258578 (+) 669 WP_012011434.1 YigZ family protein -
  QNH25_RS16730 (QNH25_16730) - 3258563..3259654 (+) 1092 WP_024423626.1 LCP family protein -
  QNH25_RS16735 (QNH25_16735) - 3259690..3260757 (-) 1068 WP_024423627.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=835150 QNH25_RS16715 WP_008348273.1 3255759..3256448(-) (degU) [Bacillus safensis strain CEW-AP100]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=835150 QNH25_RS16715 WP_008348273.1 3255759..3256448(-) (degU) [Bacillus safensis strain CEW-AP100]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTTGAGGCTACAAAGCAGCTTGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTAACACATGCATTGAAAACAGGGGCGAGAGGCTACCTGCTAAAAGA
AATGGATGCAGACACACTCATCGAAGCAGTGAAAGTTGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ATTTAGTAAATGAATTCCGACGCTTGGCAACTAGCGGCGTTTCAGCACATCCACAGCATGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACTAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGAATCGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTTAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAACGATCGTA
CACAAGCTGTTGTTGTAGCTATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996