Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QNH25_RS00590 Genome accession   NZ_CP126087
Coordinates   109451..110830 (+) Length   459 a.a.
NCBI ID   WP_034621518.1    Uniprot ID   -
Organism   Bacillus safensis strain CEW-AP100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 104451..115830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH25_RS00570 (QNH25_00570) - 104793..105257 (+) 465 WP_003217184.1 CtsR family transcriptional regulator -
  QNH25_RS00575 (QNH25_00575) - 105272..105829 (+) 558 WP_024425862.1 UvrB/UvrC motif-containing protein -
  QNH25_RS00580 (QNH25_00580) - 105834..106925 (+) 1092 WP_024425579.1 protein arginine kinase -
  QNH25_RS00585 (QNH25_00585) clpC 106922..109357 (+) 2436 WP_007496263.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  QNH25_RS00590 (QNH25_00590) radA 109451..110830 (+) 1380 WP_034621518.1 DNA repair protein RadA Machinery gene
  QNH25_RS00595 (QNH25_00595) disA 110833..111912 (+) 1080 WP_024425581.1 DNA integrity scanning diadenylate cyclase DisA -
  QNH25_RS00600 (QNH25_00600) - 112066..113166 (+) 1101 WP_024425582.1 PIN/TRAM domain-containing protein -
  QNH25_RS00605 (QNH25_00605) ispD 113180..113869 (+) 690 WP_024425583.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QNH25_RS00610 (QNH25_00610) ispF 113873..114349 (+) 477 WP_003216928.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50039.51 Da        Isoelectric Point: 7.3829

>NTDB_id=835100 QNH25_RS00590 WP_034621518.1 109451..110830(+) (radA) [Bacillus safensis strain CEW-AP100]
MAKTKSKFICQSCGYESAKWMGKCPGCGTWNSMTEEVVRKEPANRRSAFNHSVQTIQKPSPISAIETSEEPRIKTNLEEF
NRVLGSGIVKGSLVLIGGDPGIGKSTLLLQVSAQLSDKNQNVLYISGEESIKQTKLRADRLGIESTSLHVLAETDMEYIT
SAIQEMKPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAQLMKIAKTNGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNELGIFEMREEGLTEVLNPSEIFLEERSAGVSGSCVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGLDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFKDAAPHQADCFIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRMFIPQANLDGWKKPRGIELVGVENVAEALRISLGGS

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=835100 QNH25_RS00590 WP_034621518.1 109451..110830(+) (radA) [Bacillus safensis strain CEW-AP100]
ATGGCTAAGACAAAATCAAAATTTATATGCCAATCGTGCGGTTATGAGTCAGCCAAATGGATGGGGAAATGTCCAGGCTG
CGGCACGTGGAACAGTATGACAGAAGAGGTCGTTCGCAAAGAGCCGGCAAACCGTCGAAGTGCTTTTAATCATTCTGTTC
AAACCATTCAAAAACCTTCACCTATATCTGCAATTGAAACATCCGAAGAACCCCGAATTAAAACAAATTTAGAAGAATTT
AACCGAGTATTAGGAAGTGGAATTGTCAAAGGTTCTCTTGTTCTCATCGGCGGAGATCCTGGGATTGGGAAGTCCACATT
GTTATTACAAGTATCAGCACAGCTCTCAGACAAAAATCAGAATGTGTTATACATATCTGGTGAGGAGTCCATTAAACAAA
CGAAGCTAAGAGCGGACCGCCTTGGCATTGAAAGCACCTCTTTACATGTTTTGGCTGAAACCGATATGGAGTATATAACG
TCTGCTATACAGGAGATGAAACCTGCTTTTGTTGTGGTGGATTCGATTCAAACCGTTTACCAAAGCGATATAACGTCAGC
TCCCGGCTCTGTATCTCAAGTTAGAGAATGTACAGCGCAGCTGATGAAGATTGCCAAAACAAATGGTATTCCTATTTTTA
TCGTTGGTCACGTGACCAAAGAAGGCTCGATCGCAGGTCCACGCCTTTTAGAGCATATGGTGGACACAGTTCTTTATTTT
GAAGGCGAGCGTCATCATACGTTTCGTATTTTACGGGCGGTTAAAAACCGATTTGGTTCAACGAATGAATTGGGAATTTT
TGAAATGAGAGAGGAAGGGCTCACGGAAGTATTAAACCCATCAGAAATCTTTTTAGAAGAGCGGTCGGCAGGTGTATCTG
GTTCGTGTGTTGTTGCCTCAATGGAAGGAACAAGACCCGTACTTGTCGAGATACAGGCGTTAATTTCCCCGACAAGCTTT
GGGAATCCGCGAAGAATGGCCACTGGCCTTGACCATAATCGAGTATCGCTGCTCATGGCAGTTTTAGAAAAACGCGTGGG
GCTGCTGCTGCAAAACCAAGATGCCTATTTAAAGGTCGCAGGCGGTGTGAAGCTTGACGAACCGGCGATTGACTTAGCTA
TTGCCGTCAGTATTGCATCAAGCTTTAAAGATGCAGCGCCGCATCAAGCGGATTGCTTTATAGGAGAGGTCGGTCTGACG
GGAGAAGTCAGAAGAGTATCAAGAATTGAACAGCGAGTGCAGGAAGCTGCAAAACTAGGATTTAAGCGAATGTTTATTCC
TCAGGCGAATCTAGACGGATGGAAAAAGCCGAGAGGGATTGAGTTAGTTGGTGTAGAAAATGTAGCGGAGGCACTTCGAA
TTTCACTAGGGGGATCATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

87.555

99.782

0.874
  radA Streptococcus mitis NCTC 12261

61.81

98.693

0.61
  radA Streptococcus pneumoniae Rx1

61.81

98.693

0.61
  radA Streptococcus pneumoniae D39

61.81

98.693

0.61
  radA Streptococcus pneumoniae R6

61.81

98.693

0.61
  radA Streptococcus pneumoniae TIGR4

61.81

98.693

0.61
  radA Streptococcus mitis SK321

61.81

98.693

0.61