Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QNH40_RS15280 Genome accession   NZ_CP126086
Coordinates   2917471..2918112 (-) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus altitudinis strain CES-OCA-19     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2912471..2923112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH40_RS15245 (QNH40_15245) - 2913599..2914030 (+) 432 WP_008345843.1 Na(+)/H(+) antiporter subunit B -
  QNH40_RS15250 (QNH40_15250) - 2914030..2914371 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  QNH40_RS15255 (QNH40_15255) - 2914364..2915842 (+) 1479 WP_148779657.1 Na+/H+ antiporter subunit D -
  QNH40_RS15260 (QNH40_15260) - 2915849..2916328 (+) 480 WP_008345848.1 Na+/H+ antiporter subunit E -
  QNH40_RS15265 (QNH40_15265) - 2916328..2916609 (+) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  QNH40_RS15270 (QNH40_15270) mnhG 2916593..2916967 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  QNH40_RS15275 (QNH40_15275) - 2917058..2917447 (-) 390 WP_283931094.1 hotdog fold thioesterase -
  QNH40_RS15280 (QNH40_15280) comA 2917471..2918112 (-) 642 WP_007500477.1 response regulator transcription factor Regulator
  QNH40_RS15285 (QNH40_15285) comP 2918193..2920499 (-) 2307 WP_017358942.1 ATP-binding protein Regulator
  QNH40_RS15290 (QNH40_15290) comX 2920513..2920683 (-) 171 WP_017358941.1 competence pheromone ComX -
  QNH40_RS15295 (QNH40_15295) - 2920661..2921584 (-) 924 WP_035389264.1 polyprenyl synthetase family protein -
  QNH40_RS15300 (QNH40_15300) degQ 2921736..2921876 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  QNH40_RS15305 (QNH40_15305) - 2922382..2922735 (+) 354 WP_017358939.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=835081 QNH40_RS15280 WP_007500477.1 2917471..2918112(-) (comA) [Bacillus altitudinis strain CES-OCA-19]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=835081 QNH40_RS15280 WP_007500477.1 2917471..2918112(-) (comA) [Bacillus altitudinis strain CES-OCA-19]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATCTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGATGATTATTTCGAAGAGGCCATTCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAGAAGCCAGAACAGGCGCAGCAGACGGATCATGAGCTGTTAACAGAGCGTGAATGCTTAATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
TTTGACCTCCATCTTTAATAAGCTGAATGTTGGATCTCGAACAGAAGCGGTGTTAATTGCAAAATCGGAAAGTGTCCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718