Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   QNH40_RS11490 Genome accession   NZ_CP126086
Coordinates   2244286..2244579 (-) Length   97 a.a.
NCBI ID   WP_008342186.1    Uniprot ID   A0A5K1NAM4
Organism   Bacillus altitudinis strain CES-OCA-19     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2239286..2249579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH40_RS11440 (QNH40_11440) sinR 2239455..2239790 (+) 336 WP_017357978.1 helix-turn-helix domain-containing protein Regulator
  QNH40_RS11445 (QNH40_11445) - 2239858..2240658 (-) 801 WP_008342195.1 TasA family protein -
  QNH40_RS11450 (QNH40_11450) - 2240717..2241289 (-) 573 WP_041091749.1 signal peptidase I -
  QNH40_RS11455 (QNH40_11455) tapA 2241339..2241866 (-) 528 WP_046527018.1 amyloid fiber anchoring/assembly protein TapA -
  QNH40_RS11460 (QNH40_11460) - 2242119..2242445 (+) 327 WP_007501224.1 DUF3889 domain-containing protein -
  QNH40_RS11465 (QNH40_11465) - 2242481..2242669 (-) 189 WP_008360237.1 YqzE family protein -
  QNH40_RS11470 (QNH40_11470) comGG 2242730..2243113 (-) 384 WP_060832429.1 competence type IV pilus minor pilin ComGG -
  QNH40_RS11475 (QNH40_11475) comGF 2243110..2243607 (-) 498 WP_017367592.1 competence type IV pilus minor pilin ComGF -
  QNH40_RS11480 (QNH40_11480) comGE 2243549..2243863 (-) 315 WP_017367593.1 competence type IV pilus minor pilin ComGE -
  QNH40_RS11485 (QNH40_11485) comGD 2243847..2244293 (-) 447 WP_060832430.1 competence type IV pilus minor pilin ComGD -
  QNH40_RS11490 (QNH40_11490) comGC 2244286..2244579 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  QNH40_RS11495 (QNH40_11495) comGB 2244596..2245636 (-) 1041 WP_017367595.1 competence type IV pilus assembly protein ComGB -
  QNH40_RS11500 (QNH40_11500) comGA 2245617..2246687 (-) 1071 WP_017357987.1 competence type IV pilus ATPase ComGA Machinery gene
  QNH40_RS11505 (QNH40_11505) - 2247145..2248014 (-) 870 WP_007501231.1 STAS domain-containing protein -
  QNH40_RS11515 (QNH40_11515) - 2248240..2248620 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  QNH40_RS11520 (QNH40_11520) - 2248833..2249075 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10728.62 Da        Isoelectric Point: 6.7081

>NTDB_id=835070 QNH40_RS11490 WP_008342186.1 2244286..2244579(-) (comGC) [Bacillus altitudinis strain CES-OCA-19]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIFIQNGDVKNE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=835070 QNH40_RS11490 WP_008342186.1 2244286..2244579(-) (comGC) [Bacillus altitudinis strain CES-OCA-19]
ATGAATGATAAAGGATTTACACTGTTAGAAATGTTAATTGTCATGCTTGTGATCTCCATTCTTTTATTGATCACCATTCC
AAATATCACTCGGCATCATCAAAGCATTCAAGCAAAGGGCTGTGAAGGGCTGAAATCAATGGTGAGTACACAGGTAATGG
CATATGAATTAGAGCATGACGGCAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAAGGATTAACT
TGTCCGAATGGAAAGGCAATTTTCATTCAAAACGGGGATGTGAAAAATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NAM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392