Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QNH40_RS11440 Genome accession   NZ_CP126086
Coordinates   2239455..2239790 (+) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain CES-OCA-19     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2234455..2244790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH40_RS11420 (QNH40_11420) gcvT 2234931..2236028 (-) 1098 WP_116307130.1 glycine cleavage system aminomethyltransferase GcvT -
  QNH40_RS11425 (QNH40_11425) - 2236590..2238260 (+) 1671 WP_144610269.1 SNF2-related protein -
  QNH40_RS11430 (QNH40_11430) - 2238275..2239072 (+) 798 WP_017367588.1 YqhG family protein -
  QNH40_RS11435 (QNH40_11435) - 2239257..2239421 (+) 165 WP_008342197.1 anti-repressor SinI family protein -
  QNH40_RS11440 (QNH40_11440) sinR 2239455..2239790 (+) 336 WP_017357978.1 helix-turn-helix domain-containing protein Regulator
  QNH40_RS11445 (QNH40_11445) - 2239858..2240658 (-) 801 WP_008342195.1 TasA family protein -
  QNH40_RS11450 (QNH40_11450) - 2240717..2241289 (-) 573 WP_041091749.1 signal peptidase I -
  QNH40_RS11455 (QNH40_11455) tapA 2241339..2241866 (-) 528 WP_046527018.1 amyloid fiber anchoring/assembly protein TapA -
  QNH40_RS11460 (QNH40_11460) - 2242119..2242445 (+) 327 WP_007501224.1 DUF3889 domain-containing protein -
  QNH40_RS11465 (QNH40_11465) - 2242481..2242669 (-) 189 WP_008360237.1 YqzE family protein -
  QNH40_RS11470 (QNH40_11470) comGG 2242730..2243113 (-) 384 WP_060832429.1 competence type IV pilus minor pilin ComGG -
  QNH40_RS11475 (QNH40_11475) comGF 2243110..2243607 (-) 498 WP_017367592.1 competence type IV pilus minor pilin ComGF -
  QNH40_RS11480 (QNH40_11480) comGE 2243549..2243863 (-) 315 WP_017367593.1 competence type IV pilus minor pilin ComGE -
  QNH40_RS11485 (QNH40_11485) comGD 2243847..2244293 (-) 447 WP_060832430.1 competence type IV pilus minor pilin ComGD -
  QNH40_RS11490 (QNH40_11490) comGC 2244286..2244579 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=835069 QNH40_RS11440 WP_017357978.1 2239455..2239790(+) (sinR) [Bacillus altitudinis strain CES-OCA-19]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=835069 QNH40_RS11440 WP_017357978.1 2239455..2239790(+) (sinR) [Bacillus altitudinis strain CES-OCA-19]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928