Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QNH30_RS16065 Genome accession   NZ_CP126082
Coordinates   3095432..3096076 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain C1_13     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3090432..3101076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH30_RS16030 (QNH30_16030) mrpB 3091624..3092055 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  QNH30_RS16035 (QNH30_16035) mrpC 3092055..3092396 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  QNH30_RS16040 (QNH30_16040) mrpD 3092389..3093870 (+) 1482 WP_041850587.1 Na+/H+ antiporter subunit D -
  QNH30_RS16045 (QNH30_16045) mrpE 3093876..3094352 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  QNH30_RS16050 (QNH30_16050) mrpF 3094352..3094636 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  QNH30_RS16055 (QNH30_16055) mnhG 3094620..3094994 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  QNH30_RS16060 (QNH30_16060) yuxO 3095033..3095413 (-) 381 WP_014477831.1 hotdog fold thioesterase -
  QNH30_RS16065 (QNH30_16065) comA 3095432..3096076 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  QNH30_RS16070 (QNH30_16070) comP 3096157..3098457 (-) 2301 WP_041850586.1 histidine kinase Regulator
  QNH30_RS16075 (QNH30_16075) comX 3098469..3098633 (-) 165 WP_015384519.1 competence pheromone ComX -
  QNH30_RS16080 (QNH30_16080) - 3098646..3099506 (-) 861 WP_041850585.1 polyprenyl synthetase family protein -
  QNH30_RS16085 (QNH30_16085) degQ 3099690..3099830 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  QNH30_RS16090 (QNH30_16090) - 3100052..3100114 (+) 63 Protein_3100 hypothetical protein -
  QNH30_RS16095 (QNH30_16095) - 3100293..3100661 (+) 369 WP_041850584.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=834853 QNH30_RS16065 WP_003220716.1 3095432..3096076(-) (comA) [Bacillus subtilis strain C1_13]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=834853 QNH30_RS16065 WP_003220716.1 3095432..3096076(-) (comA) [Bacillus subtilis strain C1_13]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1