Detailed information NTG0083484

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ZMTM_RS04225
• Genome accession: NZ_AP024110
• Coordinates: 869353..870375 (-)
• Length: 340 a.a.
• NCBI ID: WP_221765575.1
• Uniprot ID: -
• Organism: Methyloradius palustris strain Zm11
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 864353..875375

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ZMTM_RS04200 (ZMTM_08080)	-	865317..865709 (+)	393	WP_221765069.1	MAPEG family protein	-
ZMTM_RS04205 (ZMTM_08090)	-	865724..866518 (-)	795	WP_221765070.1	thioredoxin family protein	-
ZMTM_RS04210 (ZMTM_08100)	-	866594..867523 (-)	930	WP_225907093.1	hypothetical protein	-
ZMTM_RS04215 (ZMTM_08110)	ftsX	867769..868671 (-)	903	WP_221765071.1	permease-like cell division protein FtsX	-
ZMTM_RS04220 (ZMTM_08120)	ftsE	868668..869339 (-)	672	WP_221765574.1	cell division ATP-binding protein FtsE	-
ZMTM_RS04225 (ZMTM_08130)	pilA	869353..870375 (-)	1023	WP_221765575.1	signal recognition particle-docking protein FtsY	Machinery gene
ZMTM_RS04230 (ZMTM_08140)	-	870552..871889 (+)	1338	WP_221765576.1	pitrilysin family protein	-
ZMTM_RS04235 (ZMTM_08150)	-	871879..873219 (+)	1341	WP_221765072.1	pitrilysin family protein	-
ZMTM_RS04240 (ZMTM_08160)	rsmD	873254..873808 (+)	555	WP_221765073.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
ZMTM_RS04245 (ZMTM_08170)	coaD	873795..874295 (+)	501	WP_221765074.1	pantetheine-phosphate adenylyltransferase	-
ZMTM_RS04250 (ZMTM_08180)	-	874302..874550 (+)	249	WP_221765075.1	YfhL family 4Fe-4S dicluster ferredoxin	-

Sequence

Protein

• Length: 340 a.a.
• Molecular weight: 36439.77 Da
• Isoelectric Point: 5.4758

>NTDB_id=83484 ZMTM_RS04225 WP_221765575.1 869353..870375(-) (pilA) [Methyloradius palustris strain Zm11]
MFNLFKKDKPAEPTPIPQQPTTLPSSIPEAPILDQATNNLSWAEKLKQGLSRTRNQLGGQLVGLFGGGKIDDDVYEELET
ILLTSDVGVAATQKLLDDIKNRVKRQSLSDNSQLREALKQALLELLTPLQKPLVTSTHKPFVIMLTGVNGAGKTTTIGKL
ANQFQAEGKSVLIAAGDTFRAAAREQLQVWGERNNVHVVTQDGGDPAAVIFDAVNSAKAKGIDIVMADTAGRLPTQLNLM
EEIRKVQRVIDKALPGAPHEVLLVLDANTGQNAVMQVNAFDDALGVTGLVLSKLDGTAKGGVIAAIAQSRPIPIRYIGVG
EDIADLRPFNASEFIEALFS

Nucleotide

• Length: 1023 bp

>NTDB_id=83484 ZMTM_RS04225 WP_221765575.1 869353..870375(-) (pilA) [Methyloradius palustris strain Zm11]
ATGTTCAACCTGTTCAAAAAAGATAAGCCTGCAGAACCAACGCCTATACCGCAACAACCTACAACTCTGCCATCTAGCAT
TCCCGAAGCTCCTATTTTAGACCAAGCAACAAACAATCTATCGTGGGCTGAAAAACTCAAGCAAGGGCTCAGCCGCACAC
GCAACCAGCTTGGTGGACAACTGGTAGGGCTATTTGGCGGCGGCAAGATTGATGATGATGTCTATGAAGAACTTGAAACG
ATTTTGCTCACATCGGATGTAGGCGTTGCCGCCACTCAAAAGCTGCTTGATGACATCAAGAACAGGGTAAAAAGACAAAG
CCTGAGTGACAACAGCCAACTGCGCGAGGCGCTTAAACAGGCGCTACTTGAATTACTGACACCACTACAAAAACCACTGG
TTACGTCAACGCACAAGCCCTTCGTCATCATGCTCACGGGTGTGAATGGCGCAGGTAAAACAACAACTATAGGCAAATTG
GCCAACCAGTTTCAGGCTGAAGGTAAATCAGTATTGATCGCCGCTGGCGATACTTTCCGTGCAGCAGCGCGTGAGCAATT
GCAGGTTTGGGGTGAGCGCAACAATGTCCATGTCGTTACGCAAGATGGCGGTGACCCAGCTGCCGTAATATTTGATGCGG
TGAATTCTGCCAAGGCAAAAGGCATCGACATCGTAATGGCCGATACTGCTGGTCGCTTACCCACGCAGCTGAACTTGATG
GAAGAAATTCGCAAGGTACAGCGTGTCATCGATAAAGCCTTGCCTGGCGCACCGCACGAAGTATTATTGGTGCTTGATGC
CAACACAGGCCAGAATGCAGTGATGCAGGTGAATGCATTCGATGACGCGCTTGGCGTGACAGGCCTAGTACTAAGCAAGC
TGGATGGCACCGCCAAAGGCGGCGTAATTGCAGCGATTGCGCAATCACGGCCTATCCCGATTCGCTACATTGGCGTTGGC
GAAGACATTGCTGATTTGCGCCCTTTCAATGCCAGTGAATTCATAGAAGCGCTATTCTCATAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (140-339)

• SRP54-type protein, helical bundle domain (SRP54_N) (59-122)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	65.677	89.118	0.585