Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QNH35_RS20005 Genome accession   NZ_CP126081
Coordinates   3874731..3875276 (-) Length   181 a.a.
NCBI ID   WP_065097572.1    Uniprot ID   -
Organism   Bacillus pumilus strain B2_10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3869731..3880276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH35_RS19980 (QNH35_19980) - 3869998..3870606 (-) 609 WP_283924082.1 alpha/beta hydrolase -
  QNH35_RS19985 (QNH35_19985) - 3870603..3871574 (-) 972 WP_283924083.1 ring-cleaving dioxygenase -
  QNH35_RS19990 (QNH35_19990) - 3871766..3873283 (-) 1518 WP_283924084.1 ABC transporter permease/substrate-binding protein -
  QNH35_RS19995 (QNH35_19995) - 3873276..3874241 (-) 966 WP_283924085.1 ABC transporter ATP-binding protein -
  QNH35_RS20000 (QNH35_20000) rpsR 3874451..3874690 (-) 240 WP_008347556.1 30S ribosomal protein S18 -
  QNH35_RS20005 (QNH35_20005) ssbA 3874731..3875276 (-) 546 WP_065097572.1 single-stranded DNA-binding protein SsbA Machinery gene
  QNH35_RS20010 (QNH35_20010) rpsF 3875313..3875600 (-) 288 WP_044139040.1 30S ribosomal protein S6 -
  QNH35_RS20015 (QNH35_20015) ychF 3875709..3876809 (-) 1101 WP_044139039.1 redox-regulated ATPase YchF -
  QNH35_RS20020 (QNH35_20020) - 3877026..3877232 (-) 207 WP_012011910.1 DUF951 domain-containing protein -
  QNH35_RS20025 (QNH35_20025) - 3877518..3878837 (+) 1320 WP_265208623.1 hydrolase -
  QNH35_RS20030 (QNH35_20030) - 3878853..3879263 (+) 411 WP_003215287.1 hypothetical protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19763.31 Da        Isoelectric Point: 4.6109

>NTDB_id=834789 QNH35_RS20005 WP_065097572.1 3874731..3875276(-) (ssbA) [Bacillus pumilus strain B2_10]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGSAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPNQNPYGNQSNQQNRNQGNSF
NDDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=834789 QNH35_RS20005 WP_065097572.1 3874731..3875276(-) (ssbA) [Bacillus pumilus strain B2_10]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGTTTGCAGACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAGAG
CGGCAGTGCTGGTTCAGGTGGATACAGCGGCGGTGGCAATAGCGGAGGCCAGTATTATGGCGGTAGCCAAAACGATCAGA
ATCCATTTGGAAATGAACCAAATCAAAATCCATATGGCAATCAAAGCAACCAACAAAATCGTAATCAGGGAAATAGCTTC
AATGATGACCCATTTGCGAATGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

83.978

100

0.84
  ssb Latilactobacillus sakei subsp. sakei 23K

56.354

100

0.564
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.564

0.376