Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QNH35_RS15835 Genome accession   NZ_CP126081
Coordinates   3030781..3031422 (-) Length   213 a.a.
NCBI ID   WP_058013793.1    Uniprot ID   A0A2G8IV23
Organism   Bacillus pumilus strain B2_10     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3025781..3036422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH35_RS15800 (QNH35_15800) - 3026892..3027323 (+) 432 WP_034620105.1 Na(+)/H(+) antiporter subunit B -
  QNH35_RS15805 (QNH35_15805) - 3027323..3027664 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  QNH35_RS15810 (QNH35_15810) - 3027657..3029135 (+) 1479 WP_265208432.1 Na+/H+ antiporter subunit D -
  QNH35_RS15815 (QNH35_15815) - 3029142..3029621 (+) 480 WP_003213059.1 Na+/H+ antiporter subunit E -
  QNH35_RS15820 (QNH35_15820) - 3029621..3029902 (+) 282 WP_003213177.1 Na(+)/H(+) antiporter subunit F1 -
  QNH35_RS15825 (QNH35_15825) mnhG 3029886..3030260 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  QNH35_RS15830 (QNH35_15830) - 3030368..3030757 (-) 390 WP_265208433.1 hotdog fold thioesterase -
  QNH35_RS15835 (QNH35_15835) comA 3030781..3031422 (-) 642 WP_058013793.1 response regulator transcription factor Regulator
  QNH35_RS15840 (QNH35_15840) comP 3031503..3033812 (-) 2310 WP_217012172.1 ATP-binding protein Regulator
  QNH35_RS15845 (QNH35_15845) comX 3033870..3034037 (-) 168 WP_081311380.1 competence pheromone ComX -
  QNH35_RS15850 (QNH35_15850) - 3034034..3034948 (-) 915 WP_265208437.1 polyprenyl synthetase family protein -
  QNH35_RS15855 (QNH35_15855) degQ 3035100..3035240 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  QNH35_RS15860 (QNH35_15860) - 3035746..3036099 (+) 354 WP_113768032.1 inner spore coat protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24154.55 Da        Isoelectric Point: 4.5688

>NTDB_id=834775 QNH35_RS15835 WP_058013793.1 3030781..3031422(-) (comA) [Bacillus pumilus strain B2_10]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=834775 QNH35_RS15835 WP_058013793.1 3030781..3031422(-) (comA) [Bacillus pumilus strain B2_10]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTCTAGAAACCAACCAACAAGTGAAAATCATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCCATTCGGGCTGGATTGCACGGTGCAATTAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACCGATCACGAGCTGTTAACAGAGCGAGAGTGTTTGATC
CTCAGAGAAGTGGAAAAAGGATACACGAACCAAGAGATTGCCGATGTGCTGCATTTGAGCAAACGCTCGATTGAATACAG
CTTGACGTCCATCTTTAATAAGCTGAATGTTGGCTCTCGAACCGAAGCGGTGTTAATTGCAAAATCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G8IV23

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718