Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | U2S93_RS26595 | Genome accession | NZ_CP140431 |
| Coordinates | 5598668..5599540 (+) | Length | 290 a.a. |
| NCBI ID | WP_015503555.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain 2023CK-01249 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5593668..5604540
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| U2S93_RS26570 (U2S93_26570) | nadC | 5594039..5594887 (+) | 849 | WP_022579594.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| U2S93_RS26580 (U2S93_26580) | pilE | 5595040..5595513 (-) | 474 | WP_015503553.1 | pilin | Machinery gene |
| U2S93_RS26585 (U2S93_26585) | pilB | 5595744..5597444 (+) | 1701 | WP_015503554.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| U2S93_RS26590 (U2S93_26590) | pilC | 5597448..5598665 (+) | 1218 | WP_010792214.1 | type II secretion system F family protein | Machinery gene |
| U2S93_RS26595 (U2S93_26595) | pilD | 5598668..5599540 (+) | 873 | WP_015503555.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| U2S93_RS26600 (U2S93_26600) | coaE | 5599537..5600148 (+) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| U2S93_RS26605 (U2S93_26605) | yacG | 5600145..5600345 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| U2S93_RS26610 (U2S93_26610) | - | 5600382..5600591 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| U2S93_RS26615 (U2S93_26615) | - | 5600697..5601386 (-) | 690 | WP_003094662.1 | energy-coupling factor ABC transporter permease | - |
| U2S93_RS26620 (U2S93_26620) | - | 5601383..5601853 (-) | 471 | WP_003094664.1 | hypothetical protein | - |
| U2S93_RS26625 (U2S93_26625) | - | 5601850..5602275 (-) | 426 | WP_003103865.1 | GNAT family N-acetyltransferase | - |
| U2S93_RS26630 (U2S93_26630) | - | 5602408..5603037 (+) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| U2S93_RS26635 (U2S93_26635) | - | 5603034..5603483 (+) | 450 | WP_003094670.1 | MOSC domain-containing protein | - |
| U2S93_RS26640 (U2S93_26640) | - | 5603509..5603679 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31804.80 Da Isoelectric Point: 7.3862
>NTDB_id=834773 U2S93_RS26595 WP_015503555.1 5598668..5599540(+) (pilD) [Pseudomonas aeruginosa strain 2023CK-01249]
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLASYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGVTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWHILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLASYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGVTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWHILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=834773 U2S93_RS26595 WP_015503555.1 5598668..5599540(+) (pilD) [Pseudomonas aeruginosa strain 2023CK-01249]
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTTGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGCCAGCTACCTGGCGCTGGGCGGCAAGTGTTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCGTCACCTGGCAGGCAGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCATATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTTGGCCTGCTGGTTGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGCCAGCTACCTGGCGCTGGGCGGCAAGTGTTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCGTCACCTGGCAGGCAGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCATATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
54.325 |
99.655 |
0.541 |
| pilD | Vibrio campbellii strain DS40M4 |
52.797 |
98.621 |
0.521 |
| pilD | Acinetobacter nosocomialis M2 |
50.352 |
97.931 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.352 |
97.931 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
48.921 |
95.862 |
0.469 |