Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   U2S93_RS11475 Genome accession   NZ_CP140431
Coordinates   2427179..2429155 (+) Length   658 a.a.
NCBI ID   WP_150788510.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2023CK-01249     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2422179..2434155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2S93_RS11460 (U2S93_11460) - 2423266..2424432 (-) 1167 WP_020924942.1 glutathione-independent formaldehyde dehydrogenase -
  U2S93_RS11465 (U2S93_11465) - 2424947..2425888 (-) 942 WP_079389306.1 LysR family transcriptional regulator -
  U2S93_RS11470 (U2S93_11470) - 2426373..2426804 (+) 432 WP_044069294.1 DUF488 family protein -
  U2S93_RS11475 (U2S93_11475) uvrB 2427179..2429155 (+) 1977 WP_150788510.1 excinuclease ABC subunit UvrB Machinery gene
  U2S93_RS11480 (U2S93_11480) - 2429298..2430203 (-) 906 WP_024007886.1 LysR family transcriptional regulator -
  U2S93_RS11485 (U2S93_11485) - 2430358..2430765 (+) 408 WP_009459611.1 ketosteroid isomerase-related protein -
  U2S93_RS11490 (U2S93_11490) - 2430767..2431375 (+) 609 WP_024007885.1 GNAT family acetyltransferase -
  U2S93_RS11495 (U2S93_11495) - 2431372..2432262 (+) 891 WP_024007884.1 carbon-nitrogen hydrolase family protein -
  U2S93_RS11500 (U2S93_11500) frmR 2432545..2432820 (+) 276 WP_024007883.1 formaldehyde-responsive transcriptional repressor FrmR -
  U2S93_RS11505 (U2S93_11505) - 2432880..2433989 (+) 1110 WP_024007882.1 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 74282.45 Da        Isoelectric Point: 5.2316

>NTDB_id=834736 U2S93_RS11475 WP_150788510.1 2427179..2429155(+) (uvrB) [Pseudomonas aeruginosa strain 2023CK-01249]
MSTGMFILHSNYTPAGDQPEAIARLLSDIEEGATHQTLKGITGSGKTFTMANVIHRLKRPTLILAPNKTLTAQLYGEMKH
FFPENAVEYFVSYYDYFQPEIYMPGTDRFIPKDSAINDHLERLRLSTTKSLIERRDVIVVASVSSIYGLGDPDAYRALQI
ALSPGVKLNQRELLRRLALLQYDRTERTLKRATFRAQGDVIDIFPADSEHRAVRVELLDDTVASVQWLDPVTGKTLGAID
HYFVSPKTLFAPPTNKIDSASKQILADMEERVDELNRNNRLVEANRLYERITHDVEMMREVGYCSGMENYSCYFSDRDPA
SPPITLLDYLPKDGLLFVDESHVMVPQISAMYRGDQARKETLIDYGFRLPSSKNNRPLNFGEFEKVKPQTIFVSATPGDY
ELKVSKGRVVEQVIRPTGLLDPEVEVRKADGYINNLLAEISKCVKKKNRVLVTTLTKVSAEELTDFLTDHGIRARYMHSD
IKVEDRVEIINGLRAGEFDVLIGISLLREGLDIPEASLVAILDADRAGFLRSAQALIQMIGRVARNENGKAILYADVTTP
AMKQAIDETNRRRQLQIAFNEENGISPVSSVRKLAGEETSTEEPAVHSEAFCENLSDLCDQITAKEQQLLEFTDTGDEQR
VEDIRRQLDGLYRQFIYV

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=834736 U2S93_RS11475 WP_150788510.1 2427179..2429155(+) (uvrB) [Pseudomonas aeruginosa strain 2023CK-01249]
ATGTCAACCGGTATGTTCATTCTGCACTCCAACTATACGCCGGCGGGGGACCAGCCAGAGGCGATAGCGCGCCTGCTGTC
GGACATAGAAGAAGGTGCGACACACCAGACGCTGAAAGGTATCACCGGCTCAGGTAAGACCTTCACCATGGCCAATGTGA
TTCATCGTCTGAAGCGGCCTACGTTGATCTTGGCTCCTAACAAGACGTTGACCGCGCAGCTTTATGGTGAAATGAAGCAC
TTCTTTCCTGAGAACGCGGTCGAGTACTTCGTTTCCTACTACGATTATTTTCAGCCCGAGATCTATATGCCGGGCACTGA
TCGTTTCATTCCAAAGGACTCGGCCATCAATGACCACCTTGAGCGCCTGCGCCTGTCCACGACTAAATCGTTGATTGAGC
GCCGCGATGTGATCGTCGTCGCTTCGGTGTCTTCAATCTACGGCCTGGGTGACCCGGATGCGTACCGAGCGTTACAGATC
GCCCTGTCCCCCGGGGTCAAACTAAACCAGAGGGAGCTGCTTCGTCGCTTGGCTCTGCTGCAATATGATCGCACTGAGCG
CACTCTCAAGCGTGCAACGTTCCGCGCTCAAGGTGATGTGATCGATATCTTTCCTGCTGATTCCGAGCATAGGGCAGTTC
GGGTGGAGCTGCTGGATGACACTGTTGCGTCCGTTCAATGGCTAGACCCTGTCACAGGTAAAACGCTGGGGGCAATTGAC
CATTATTTTGTTTCACCAAAGACGCTTTTTGCGCCGCCCACGAATAAAATAGATTCCGCGTCCAAGCAGATACTCGCTGA
TATGGAAGAGCGAGTTGACGAGTTGAACAGAAATAATCGCTTGGTCGAGGCAAACCGGCTGTACGAGCGGATCACACATG
ACGTGGAGATGATGCGTGAGGTAGGCTATTGCTCGGGCATGGAGAATTATTCCTGCTACTTCAGCGACCGGGACCCGGCC
TCGCCTCCGATCACATTGCTGGATTACCTGCCGAAGGACGGGCTTCTGTTCGTCGATGAATCCCACGTCATGGTGCCGCA
GATATCCGCAATGTACCGGGGGGATCAGGCGCGCAAGGAGACGTTGATAGATTACGGGTTCCGCTTGCCTTCGTCTAAGA
ATAATCGACCTTTGAACTTTGGCGAATTCGAGAAGGTCAAGCCACAAACCATCTTCGTTTCCGCGACCCCGGGTGACTAC
GAGTTGAAGGTGTCGAAAGGCCGCGTCGTCGAGCAGGTCATCAGGCCAACGGGACTGCTTGATCCCGAGGTGGAAGTGCG
AAAAGCGGATGGATACATAAATAATCTGCTTGCCGAAATATCGAAGTGCGTAAAGAAAAAGAATCGAGTGCTGGTGACTA
CGCTGACAAAGGTCAGTGCAGAAGAGCTAACGGATTTCTTGACGGACCATGGGATTCGAGCGCGCTACATGCATTCGGAC
ATAAAGGTAGAGGATCGTGTCGAGATCATCAATGGCCTGCGCGCAGGAGAGTTCGACGTTTTGATTGGGATTAGTCTATT
GCGCGAAGGTCTGGATATTCCCGAGGCGTCATTGGTTGCCATTCTCGATGCGGATCGGGCAGGCTTCCTGCGGTCGGCCC
AGGCACTCATTCAGATGATAGGTCGAGTTGCTCGGAATGAAAACGGCAAGGCGATCTTGTACGCCGATGTGACGACTCCG
GCGATGAAACAGGCGATCGATGAGACAAATAGGCGCAGGCAGCTTCAAATTGCCTTTAACGAAGAAAATGGAATTTCTCC
GGTCTCTTCTGTGCGAAAACTAGCAGGAGAAGAGACGAGTACGGAGGAACCCGCCGTTCATTCCGAGGCTTTCTGCGAGA
ACTTGTCCGACCTTTGCGATCAGATCACTGCCAAGGAACAGCAGCTACTCGAATTTACCGATACCGGTGATGAGCAGCGC
GTCGAAGATATCCGTCGTCAGTTGGATGGTTTGTACCGGCAATTCATTTACGTCTAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(17-114)

Helicase conserved C-terminal domain (Helicase_C)

(435-546)

Ultra-violet resistance protein B (UvrB)

(553-593)

UvrB interaction domain (UvrB_inter)

(160-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

52.129

89.21

0.465
  uvrB Streptococcus pneumoniae R6

52.129

89.21

0.465
  uvrB Streptococcus pneumoniae D39

52.129

89.21

0.465