Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   QNH35_RS04170 Genome accession   NZ_CP126081
Coordinates   875882..876673 (+) Length   263 a.a.
NCBI ID   WP_126741954.1    Uniprot ID   -
Organism   Bacillus pumilus strain B2_10     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 870882..881673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH35_RS04135 (QNH35_04135) - 870965..871513 (+) 549 WP_003217810.1 thioredoxin family protein -
  QNH35_RS04140 (QNH35_04140) - 871850..872317 (+) 468 WP_003217856.1 DUF393 domain-containing protein -
  QNH35_RS04145 (QNH35_04145) - 872354..873610 (-) 1257 WP_065097460.1 transcriptional regulator -
  QNH35_RS04150 (QNH35_04150) - 873885..874472 (+) 588 WP_185108759.1 nitroreductase -
  QNH35_RS04155 (QNH35_04155) - 874511..874666 (-) 156 WP_012009317.1 YfhD family protein -
  QNH35_RS04160 (QNH35_04160) - 874728..874838 (-) 111 WP_017358836.1 YfhE family protein -
  QNH35_RS04165 (QNH35_04165) - 874891..875787 (-) 897 WP_283924248.1 TIGR01777 family oxidoreductase -
  QNH35_RS04170 (QNH35_04170) recX 875882..876673 (+) 792 WP_126741954.1 recombination regulator RecX Regulator
  QNH35_RS04175 (QNH35_04175) - 876677..876991 (+) 315 WP_283924249.1 YfhH family protein -
  QNH35_RS04180 (QNH35_04180) - 877157..877330 (-) 174 WP_003217811.1 YpzG family protein -
  QNH35_RS04185 (QNH35_04185) - 877356..877505 (-) 150 WP_003217849.1 small, acid-soluble spore protein K -
  QNH35_RS04190 (QNH35_04190) - 877622..877894 (+) 273 WP_044139690.1 YfhJ family protein -
  QNH35_RS04195 (QNH35_04195) - 878184..879167 (+) 984 WP_003217835.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30620.02 Da        Isoelectric Point: 6.9987

>NTDB_id=834736 QNH35_RS04170 WP_126741954.1 875882..876673(+) (recX) [Bacillus pumilus strain B2_10]
MPYITKISAQKNNTERVNIFLDEKYAFSVDLDVLVQHDLKKGKELDEADVIDIQFGDAVKKGFQQAVDYLSYRMRSVKEV
TDYLTKKEIPAPAISEIIHKLKHYKYVNDLEFAEAYVNTHRKTNSKGPSVLKKELKLKGIDDDNIEQALSQYPDDLQLEE
AVKQVQKLVRKEKNRSAKEIEQRIKLQLQRKGFSFGIIDKALQEAYDGQEEEKEEEALLYMMEKAKRKVGYDGSFEKKMK
VKQFLFRKGFDLDTIDHVLDKGE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=834736 QNH35_RS04170 WP_126741954.1 875882..876673(+) (recX) [Bacillus pumilus strain B2_10]
ATGCCCTATATTACAAAAATCTCCGCTCAGAAAAACAATACAGAGCGGGTGAACATCTTTCTTGATGAAAAGTACGCCTT
TAGCGTTGATCTAGATGTGCTCGTCCAGCACGATTTGAAAAAAGGGAAAGAGCTGGACGAAGCAGATGTCATCGACATTC
AATTCGGTGATGCTGTGAAAAAAGGATTTCAACAGGCCGTCGATTATTTATCCTACCGAATGAGATCGGTGAAAGAAGTA
ACCGATTATTTGACGAAAAAAGAAATCCCGGCACCTGCTATTAGTGAAATTATACACAAATTAAAGCATTACAAGTATGT
AAATGATCTTGAATTTGCGGAAGCCTATGTAAACACCCACCGTAAAACGAACAGCAAAGGGCCGTCCGTCCTGAAAAAAG
AGCTAAAACTCAAAGGAATAGATGATGACAACATTGAACAAGCATTATCGCAATATCCTGATGACTTACAGCTGGAGGAA
GCTGTGAAGCAGGTTCAGAAGCTTGTGAGAAAAGAAAAAAATCGTTCTGCAAAAGAGATCGAGCAGCGCATCAAGCTGCA
GCTGCAGCGAAAGGGATTTTCGTTTGGGATCATTGATAAAGCCCTTCAAGAAGCCTATGATGGACAAGAAGAGGAAAAGG
AAGAAGAAGCGCTCCTTTATATGATGGAGAAGGCAAAACGCAAGGTAGGATATGACGGATCATTTGAAAAGAAGATGAAA
GTGAAGCAATTTTTATTCAGAAAAGGCTTTGATCTCGACACAATTGATCACGTTTTAGACAAAGGGGAATGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

61.977

100

0.62