Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QNH36_RS21710 Genome accession   NZ_CP126080
Coordinates   4309257..4310321 (-) Length   354 a.a.
NCBI ID   WP_349654828.1    Uniprot ID   -
Organism   Mesobacillus sp. AQ2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4304257..4315321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH36_RS21680 (QNH36_21680) flgL 4304786..4305676 (-) 891 WP_283904188.1 flagellar hook-associated protein FlgL -
  QNH36_RS21685 (QNH36_21685) flgK 4305687..4307234 (-) 1548 WP_283904189.1 flagellar hook-associated protein FlgK -
  QNH36_RS21690 (QNH36_21690) - 4307253..4307723 (-) 471 WP_283904190.1 flagellar protein FlgN -
  QNH36_RS21695 (QNH36_21695) flgM 4307781..4308050 (-) 270 WP_283904191.1 flagellar biosynthesis anti-sigma factor FlgM -
  QNH36_RS21700 (QNH36_21700) - 4308129..4308530 (-) 402 WP_283904192.1 TIGR03826 family flagellar region protein -
  QNH36_RS21705 (QNH36_21705) - 4308559..4309260 (-) 702 WP_283904193.1 ComF family protein -
  QNH36_RS21710 (QNH36_21710) comFA 4309257..4310321 (-) 1065 WP_349654828.1 DEAD/DEAH box helicase Machinery gene
  QNH36_RS21715 (QNH36_21715) - 4310991..4311830 (-) 840 WP_283904194.1 DegV family protein -
  QNH36_RS21720 (QNH36_21720) sda 4312103..4312264 (-) 162 WP_283904195.1 sporulation histidine kinase inhibitor Sda -
  QNH36_RS21725 (QNH36_21725) - 4312415..4313098 (-) 684 WP_283904196.1 response regulator transcription factor -
  QNH36_RS21730 (QNH36_21730) - 4313155..4314297 (-) 1143 WP_283904197.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 39774.10 Da        Isoelectric Point: 9.5342

>NTDB_id=834719 QNH36_RS21710 WP_349654828.1 4309257..4310321(-) (comFA) [Mesobacillus sp. AQ2]
MDKPLLWDGVLSEGQDAASNRVSVAVENSAELLVWAVAGAGKTEVLFAGIENALSTGMRVCIATPRTDVVLELAPRLQKV
FPEITVAVLYGGNEDRHEYAQLTIATTHQLLRFYKAFDVMIVDEVDAFPYSIDETLQYAVQQSRKPESSLIYLTATPNKQ
WQKECRTGKRNYVTIPARFHRQPLPVPQFVWSGNWEKQLKKRKLTTSIKKWIEPRLASGKQALIFAPKIAVMDKILNILR
AMNPLIESVHAEDPDRKEKVLRFRNKEIPILLTTTILERGVTIPNIDVAVIGAEDRIFTESALVQIAGRAGRSAEYPTGD
VTFFHYGKTEAMISARRQIVMMNKEGIKKGLIDV

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=834719 QNH36_RS21710 WP_349654828.1 4309257..4310321(-) (comFA) [Mesobacillus sp. AQ2]
ATGGATAAACCACTACTTTGGGATGGTGTTTTATCAGAAGGTCAGGATGCTGCTTCTAATCGAGTGTCGGTTGCTGTGGA
AAACTCAGCCGAGCTCCTTGTCTGGGCAGTTGCAGGAGCTGGTAAGACAGAAGTATTATTCGCCGGCATAGAAAATGCTC
TATCCACGGGTATGCGGGTTTGTATAGCTACGCCAAGAACAGATGTGGTCTTGGAACTGGCACCCCGCTTGCAAAAAGTG
TTTCCGGAAATAACGGTGGCCGTTCTCTATGGCGGCAACGAAGACCGCCATGAATATGCCCAGCTCACTATTGCTACCAC
GCATCAGCTACTCCGCTTTTACAAAGCATTCGATGTTATGATTGTCGATGAAGTCGACGCCTTTCCATATTCAATAGATG
AAACCCTCCAATATGCAGTCCAGCAATCAAGGAAGCCTGAATCCTCGTTAATTTACTTAACGGCAACACCGAACAAGCAA
TGGCAAAAGGAATGCCGCACGGGAAAAAGAAACTACGTCACGATTCCTGCCCGCTTCCATCGCCAGCCATTGCCGGTACC
TCAGTTTGTCTGGTCCGGTAATTGGGAGAAGCAACTGAAAAAAAGAAAGCTAACCACTTCGATAAAAAAATGGATAGAAC
CCAGATTGGCCAGCGGAAAGCAGGCGTTGATTTTTGCCCCGAAAATAGCCGTAATGGACAAGATCCTTAACATCCTTCGC
GCAATGAATCCTCTTATTGAATCCGTCCATGCTGAAGACCCAGATAGAAAAGAAAAAGTATTGAGGTTCCGAAATAAAGA
AATTCCTATTTTGCTGACGACAACTATTCTGGAGCGGGGTGTTACAATCCCCAATATCGATGTCGCGGTAATCGGTGCAG
AGGACAGGATTTTTACCGAGAGCGCCCTTGTCCAGATTGCTGGCCGGGCAGGGAGGAGTGCGGAATATCCTACGGGCGAC
GTGACCTTTTTTCATTATGGCAAAACAGAAGCGATGATCAGTGCCCGCAGACAGATTGTGATGATGAACAAGGAAGGAAT
CAAGAAAGGGTTGATTGATGTATGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(11-158)

Helicase conserved C-terminal domain (Helicase_C)

(217-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

53.582

98.588

0.528
  comFA Latilactobacillus sakei subsp. sakei 23K

43.314

97.175

0.421
  comFA/cflA Streptococcus pneumoniae Rx1

42.733

97.175

0.415
  comFA/cflA Streptococcus pneumoniae D39

42.733

97.175

0.415
  comFA/cflA Streptococcus pneumoniae R6

42.733

97.175

0.415
  comFA/cflA Streptococcus mitis NCTC 12261

42.733

97.175

0.415
  comFA/cflA Streptococcus mitis SK321

42.442

97.175

0.412
  comFA/cflA Streptococcus pneumoniae TIGR4

42.442

97.175

0.412
  comFA Lactococcus lactis subsp. cremoris KW2

40.698

97.175

0.395