Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QNH36_RS17335 Genome accession   NZ_CP126080
Coordinates   3417544..3419979 (-) Length   811 a.a.
NCBI ID   WP_144476104.1    Uniprot ID   A0AA95I097
Organism   Mesobacillus sp. AQ2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3412544..3424979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH36_RS17315 (QNH36_17315) - 3415223..3416302 (-) 1080 WP_283905432.1 AI-2E family transporter -
  QNH36_RS17320 (QNH36_17320) - 3416583..3416717 (-) 135 WP_251540968.1 YrzQ family protein -
  QNH36_RS17325 (QNH36_17325) - 3416741..3416932 (-) 192 WP_144476106.1 hypothetical protein -
  QNH36_RS17330 (QNH36_17330) - 3416942..3417418 (-) 477 WP_283903871.1 PRC-barrel domain-containing protein -
  QNH36_RS17335 (QNH36_17335) recD2 3417544..3419979 (-) 2436 WP_144476104.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QNH36_RS17340 (QNH36_17340) - 3420013..3420672 (-) 660 WP_144476103.1 tetratricopeptide repeat protein -
  QNH36_RS17345 (QNH36_17345) mnmA 3420771..3421886 (-) 1116 WP_283903872.1 tRNA 2-thiouridine(34) synthase MnmA -
  QNH36_RS17350 (QNH36_17350) - 3421928..3423082 (-) 1155 WP_144476101.1 cysteine desulfurase family protein -
  QNH36_RS17355 (QNH36_17355) - 3423168..3423590 (-) 423 WP_144476100.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 811 a.a.        Molecular weight: 91561.41 Da        Isoelectric Point: 4.8164

>NTDB_id=834709 QNH36_RS17335 WP_144476104.1 3417544..3419979(-) (recD2) [Mesobacillus sp. AQ2]
MDKQDSLDLFSEQGKFMKGKHLVTIFHNEQNLYTVLRIRVEETNEQYDDKEAVITGYFPRIHEQETYIFFGEVKEHPKFG
AQFHATHFRKDLPQSKQGIISYLSSDLFKGIGKKTAEKIVETLGEKAITRIIENPSVLDQIPKLAPEKAKDLYDTLMEHQ
GLEQVMVALNDYGFGPQLSMKIYQVYKEQAIEVIQNNPYKLVEDIEGIGFGRADELGSQLGLTGNHPDRIKAACLYTLEN
SSIQGGHVFMDAEALLVDVKKLLEDNQNFQIEFTDISREIIKLGEEGKLIAEEQRIYLPSLFYSEKGLVANIKRILEQTE
YENQFPESEFLLALGNLEERLNVQYAPSQKEAIQTALMSPMMILTGGPGTGKTTVIKGIVELYGELHGCSLEPKDYKKEE
PYPFLLAAPTGRAAKRMTESTGLPAVTIHRLLRWNGAEGFEHNEDQPLEGKILIIDETSMVDIWLAHQLFKSLPDNIQVI
IVGDEDQLPSVGPGQVLKDLLDSGRIPTVRLTDIYRQAEGSSIIELAHQIKKGYLPEDISAQQADRSFIRCSTNQIPQVV
EKVVANAKKKGYSPRNIQVLAPMYRGPAGIDRLNELLQNLFNPNADGTRKELAFGDVKYRIGDKVLQLVNQPEANVFNGD
MGEVVAIFYAKENTEKQDQLIVSFDGIEVTYNRPDLSQITHAYCCSVHKSQGSEFPIVVLPVVKSYYRMLRRNLIYTAIT
RSKQFLILVGEEDALKMGIERGEDTERNTTLVEKLVEMLPDLSGKQTEKVTLPATQEDSKQVDYLEMMKSADPMIGMENV
SPYDFMEENNA

Nucleotide


Download         Length: 2436 bp        

>NTDB_id=834709 QNH36_RS17335 WP_144476104.1 3417544..3419979(-) (recD2) [Mesobacillus sp. AQ2]
TTGGATAAGCAGGACTCTCTAGATTTGTTTTCAGAGCAGGGGAAGTTCATGAAAGGAAAGCATTTAGTCACCATTTTCCA
TAATGAACAAAACCTTTACACCGTACTGAGAATCAGGGTCGAGGAAACAAATGAACAGTATGATGATAAAGAGGCAGTCA
TTACCGGGTACTTCCCCAGGATTCATGAGCAGGAGACATATATTTTCTTTGGTGAAGTAAAAGAACATCCCAAGTTTGGC
GCCCAATTTCATGCAACGCATTTCAGAAAAGACCTTCCCCAGTCCAAACAGGGAATCATCAGCTATTTGTCCAGTGACCT
TTTTAAAGGAATCGGAAAGAAAACGGCTGAAAAAATCGTTGAGACTCTTGGTGAAAAAGCCATCACGAGGATCATCGAGA
ATCCCTCTGTTCTGGACCAGATTCCGAAACTGGCACCTGAAAAGGCAAAGGACTTGTATGATACTCTGATGGAGCATCAA
GGCCTTGAACAGGTGATGGTCGCTTTGAACGATTATGGTTTTGGCCCGCAGCTGTCGATGAAAATATATCAAGTATATAA
AGAACAGGCCATTGAAGTGATCCAAAACAATCCCTATAAACTTGTTGAAGACATTGAGGGCATCGGTTTTGGCAGGGCTG
ATGAACTTGGAAGCCAACTGGGCCTGACGGGTAACCATCCTGACCGGATCAAGGCTGCCTGCCTTTATACCCTGGAGAAT
TCAAGCATACAGGGCGGACATGTCTTCATGGATGCGGAAGCACTGCTTGTAGATGTGAAAAAGCTGCTTGAAGACAATCA
GAATTTCCAGATTGAATTTACGGATATCTCCAGGGAAATCATCAAGCTTGGTGAAGAAGGAAAGCTGATTGCCGAAGAGC
AGAGAATCTATTTGCCATCGCTCTTTTATTCTGAAAAGGGACTTGTGGCGAATATCAAAAGAATCCTTGAGCAGACGGAG
TATGAAAATCAATTTCCTGAATCCGAATTCCTCCTTGCGCTCGGGAATCTTGAAGAGCGTCTCAATGTCCAATATGCTCC
GAGTCAAAAAGAAGCCATCCAGACAGCACTGATGTCGCCAATGATGATCCTGACAGGCGGTCCTGGTACAGGGAAAACGA
CCGTAATAAAAGGAATCGTGGAATTATACGGAGAACTCCATGGCTGTTCCTTAGAGCCAAAAGATTATAAAAAGGAGGAG
CCGTATCCGTTTTTGCTTGCAGCTCCTACCGGCAGGGCCGCAAAACGAATGACCGAGTCCACGGGTCTGCCTGCCGTAAC
CATCCACAGGCTGCTTCGCTGGAATGGCGCTGAAGGCTTTGAACATAATGAGGATCAGCCGCTTGAAGGGAAAATCCTGA
TTATTGATGAGACCTCAATGGTCGATATCTGGCTGGCCCATCAATTGTTCAAATCACTGCCTGATAATATTCAGGTTATC
ATTGTGGGCGATGAAGACCAGCTTCCTTCCGTTGGTCCAGGGCAGGTATTGAAGGACCTGCTTGATTCCGGCAGGATTCC
TACAGTGAGGCTGACCGATATTTACAGGCAGGCAGAAGGTTCATCAATCATTGAACTTGCCCACCAAATCAAAAAAGGGT
ATCTGCCTGAGGACATTTCTGCCCAACAGGCTGACCGCTCTTTTATAAGATGTTCGACAAACCAGATTCCCCAAGTAGTC
GAAAAAGTTGTCGCAAATGCCAAGAAAAAAGGCTATTCGCCAAGAAATATCCAGGTTCTGGCTCCTATGTACCGGGGACC
TGCAGGGATTGACCGGCTAAACGAGCTTTTGCAGAATTTATTCAATCCGAATGCAGACGGCACAAGGAAAGAGCTGGCCT
TCGGCGATGTGAAATACCGGATCGGCGATAAGGTCCTCCAGCTGGTCAACCAGCCGGAAGCAAATGTGTTCAACGGGGAT
ATGGGTGAGGTCGTCGCGATTTTTTACGCAAAGGAAAACACAGAAAAACAAGATCAGTTGATTGTTTCCTTTGACGGGAT
CGAAGTAACTTATAATCGTCCAGATCTTTCACAAATTACCCATGCTTACTGCTGTTCGGTGCATAAATCACAGGGGAGTG
AATTTCCGATTGTCGTACTTCCGGTTGTGAAAAGTTATTACAGGATGCTGCGAAGGAATTTAATCTATACGGCCATCACA
AGAAGCAAGCAATTTCTGATTCTCGTTGGCGAAGAAGATGCCTTGAAAATGGGCATCGAACGCGGAGAAGATACAGAGCG
GAATACAACGCTTGTTGAAAAGCTAGTCGAGATGCTTCCTGATTTGAGCGGTAAGCAGACAGAGAAGGTAACTTTACCGG
CTACACAAGAGGACAGTAAGCAGGTTGACTATCTGGAAATGATGAAGAGCGCGGACCCGATGATCGGAATGGAGAACGTG
TCTCCTTATGATTTTATGGAAGAGAATAATGCATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

AAA domain (AAA_30)

(345-553)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-664)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.222

99.877

0.621