Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   QNH36_RS17410 Genome accession   NZ_CP126080
Coordinates   3435916..3438285 (-) Length   789 a.a.
NCBI ID   WP_283903873.1    Uniprot ID   -
Organism   Mesobacillus sp. AQ2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3430916..3443285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH36_RS17395 (QNH36_17395) dtd 3432413..3432853 (-) 441 WP_144476095.1 D-aminoacyl-tRNA deacylase -
  QNH36_RS17400 (QNH36_17400) - 3432904..3435096 (-) 2193 WP_144476094.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  QNH36_RS17405 (QNH36_17405) - 3435413..3435925 (-) 513 WP_144476093.1 adenine phosphoribosyltransferase -
  QNH36_RS17410 (QNH36_17410) recJ 3435916..3438285 (-) 2370 WP_283903873.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  QNH36_RS17415 (QNH36_17415) - 3438442..3438759 (-) 318 WP_144476091.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  QNH36_RS17420 (QNH36_17420) - 3438779..3439702 (-) 924 WP_144476090.1 cation diffusion facilitator family transporter -
  QNH36_RS17425 (QNH36_17425) secDF 3439865..3442135 (-) 2271 WP_283903874.1 protein translocase subunit SecDF -
  QNH36_RS17430 (QNH36_17430) - 3442356..3442655 (-) 300 WP_283903875.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 789 a.a.        Molecular weight: 88376.23 Da        Isoelectric Point: 5.1662

>NTDB_id=834710 QNH36_RS17410 WP_283903873.1 3435916..3438285(-) (recJ) [Mesobacillus sp. AQ2]
MLKPKSRWIVKESDMIKIESLAKDLNVTPLTASLLVNRGLDTVEDARYFLFAQKGEFHDPFLLKDMDKAVERINKAVETQ
EPIWVFGDYDADGVSSTTVMMKALVELGANADYYIPNRFTEGYGPNEKAFRAASEKGVGLIITVDTGISALHEANVAREL
GIDLIITDHHEPGPVLPDAFAIIHPKLEDSAYPFKDLAGVGVAFKVAHALLGRLPEHLLEFAAIGTIADLVPLLGENRLI
AIKGIEKLKLSQTPGLNALLKLAKTDRSSIDEETIGFMIGPRVNAAGRLGSADPAVQLMMTSDSEEAKMLAEEIDSINKE
RQSIVAQIAEEAIGEVEQRYPIEDNPVLVVGKEGWNAGVIGIVASKLVEKYYRPTIVLSFDDEKGLAKGSARSIAGFDLF
KNLSTCRDILPHFGGHPMAAGMTLELKNVDELRSRLNALAKEQLKEEDLIPVSHIDARIDVKEITIETINELGLLSPYGV
SNPKPKVLVDGANISTLRKIGADQSHLKLALEENGTVIDGIGFGFGHLHEHISPSSKLSVIGELSINEWNNIKKPQIFLR
DLAVRSWQLFDFRGLKRIEKLPDMIPGDQPVHWIHFNAESTNKFSPIIGDSLQLVATDEQAEQIVLNDSFVVLLDLPPSK
DILERLFAKKNPERIYAHFYKENSDFFTTMPTREHFKWFYAFLSKKGPFDLKRYGDELAKHRGWTKETVEFMSQVFFELD
FVKINNGFISLKENVPKRDLSESKTYQHKVQAFTLENELLYSSYEQLKNWFDQFIQESVKNEEAIIQWI

Nucleotide


Download         Length: 2370 bp        

>NTDB_id=834710 QNH36_RS17410 WP_283903873.1 3435916..3438285(-) (recJ) [Mesobacillus sp. AQ2]
ATGTTAAAGCCAAAATCAAGATGGATTGTTAAAGAATCCGATATGATAAAAATAGAGTCACTTGCAAAAGACCTGAACGT
AACTCCTCTGACGGCTTCATTGCTAGTCAATCGCGGACTGGATACCGTGGAAGATGCCCGGTATTTTTTATTTGCGCAAA
AAGGTGAGTTTCACGACCCTTTTTTGCTGAAGGATATGGACAAGGCAGTTGAGAGAATCAATAAGGCAGTTGAGACACAG
GAGCCCATCTGGGTGTTTGGAGATTATGATGCTGATGGTGTAAGCAGTACGACGGTCATGATGAAAGCATTGGTTGAATT
GGGTGCCAACGCCGACTACTACATACCGAACCGTTTTACAGAAGGATATGGCCCAAACGAAAAAGCTTTCAGAGCTGCTT
CTGAAAAAGGTGTCGGGCTGATCATCACTGTCGATACCGGCATTTCAGCTCTTCATGAAGCAAATGTGGCCAGGGAATTA
GGCATCGACCTTATCATAACCGATCATCATGAACCAGGTCCTGTCTTGCCTGATGCGTTTGCCATCATTCATCCAAAACT
GGAGGACAGTGCTTATCCTTTTAAGGATTTGGCCGGGGTCGGCGTAGCGTTCAAGGTTGCCCATGCATTGCTTGGCCGAC
TTCCTGAGCATTTGCTGGAGTTTGCTGCCATAGGTACGATTGCCGATCTGGTGCCGTTGCTTGGGGAAAACAGGCTGATC
GCAATTAAAGGCATTGAAAAACTGAAGTTAAGCCAGACGCCAGGTTTGAATGCGCTGCTTAAGCTCGCCAAAACAGACCG
GTCATCAATTGATGAAGAAACGATCGGTTTCATGATCGGGCCGCGGGTCAATGCAGCAGGCCGTTTAGGAAGTGCAGACC
CGGCAGTACAATTAATGATGACATCGGATTCTGAAGAGGCAAAAATGCTGGCCGAAGAAATTGATTCAATCAATAAAGAG
CGGCAAAGTATTGTTGCCCAGATTGCAGAAGAAGCTATTGGTGAAGTGGAACAGCGTTATCCTATCGAAGATAATCCAGT
ACTCGTTGTGGGCAAGGAAGGCTGGAATGCCGGTGTAATCGGAATCGTAGCCTCCAAGCTGGTAGAAAAATATTATCGGC
CGACGATTGTACTCAGTTTTGATGATGAAAAGGGGCTTGCGAAGGGATCTGCCCGAAGTATTGCCGGATTTGACCTCTTT
AAAAATCTATCAACATGCAGGGATATCCTTCCACATTTCGGCGGTCATCCTATGGCTGCCGGCATGACACTGGAGCTTAA
AAATGTCGATGAATTAAGGTCCAGGCTGAATGCGCTGGCAAAAGAGCAGTTGAAGGAAGAAGATCTGATTCCGGTGTCAC
ATATAGATGCCAGAATAGATGTTAAAGAGATTACAATAGAAACGATCAATGAGCTTGGCCTCCTTTCTCCATATGGTGTC
AGCAATCCCAAGCCAAAGGTGCTGGTTGACGGGGCGAACATTTCTACCCTCCGAAAAATAGGAGCGGACCAATCCCATCT
GAAATTGGCGCTTGAGGAAAATGGTACGGTGATTGATGGAATCGGATTTGGGTTTGGCCACCTGCATGAGCATATTTCAC
CGAGCTCCAAACTATCGGTAATTGGAGAATTATCGATCAATGAATGGAACAATATCAAAAAGCCGCAGATTTTCCTTAGG
GATTTAGCCGTAAGGTCATGGCAGCTATTCGATTTCCGCGGACTGAAAAGAATTGAAAAGCTTCCAGACATGATTCCAGG
TGATCAGCCTGTTCACTGGATCCACTTCAATGCTGAATCGACAAATAAGTTTTCTCCGATTATCGGAGATTCATTGCAGC
TTGTAGCGACCGATGAACAAGCAGAGCAGATTGTGCTGAACGATTCATTCGTTGTCTTGCTGGATCTGCCGCCTTCCAAG
GATATTCTCGAAAGGTTATTCGCCAAAAAGAATCCAGAAAGAATCTATGCTCATTTTTACAAAGAAAATAGCGATTTCTT
CACGACAATGCCGACCAGGGAACATTTCAAATGGTTTTATGCTTTTCTTTCCAAGAAAGGTCCCTTCGACCTCAAACGGT
ATGGTGATGAATTGGCCAAGCATAGGGGATGGACAAAAGAAACAGTAGAATTCATGTCGCAGGTGTTTTTTGAACTAGAT
TTTGTTAAAATAAACAATGGGTTTATTTCACTAAAAGAAAATGTCCCCAAAAGGGATCTTTCTGAATCCAAAACATATCA
GCACAAGGTGCAAGCATTCACTCTTGAAAATGAATTGCTCTATTCATCCTATGAGCAGTTGAAGAACTGGTTTGACCAGT
TCATTCAAGAGTCGGTGAAAAATGAGGAGGCAATTATTCAATGGATTTGA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(455-561)

DHH family (DHH)

(83-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)

DHHA1 domain (DHHA1)

(315-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.376

99.493

0.531