Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   U2S93_RS02090 Genome accession   NZ_CP140431
Coordinates   441721..442086 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain 2023CK-01249     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 436721..447086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2S93_RS02060 (U2S93_02060) pyrR 437343..437855 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  U2S93_RS02065 (U2S93_02065) ruvX 437967..438401 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  U2S93_RS02070 (U2S93_02070) - 438401..438970 (-) 570 WP_003084577.1 YqgE/AlgH family protein -
  U2S93_RS02075 (U2S93_02075) - 439019..439912 (-) 894 WP_023112660.1 energy transducer TonB -
  U2S93_RS02080 (U2S93_02080) gshB 440059..441012 (-) 954 WP_003100943.1 glutathione synthase -
  U2S93_RS02085 (U2S93_02085) pilG 441267..441674 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  U2S93_RS02090 (U2S93_02090) pilH 441721..442086 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  U2S93_RS02095 (U2S93_02095) - 442137..442673 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  U2S93_RS02100 (U2S93_02100) pilJ 442758..444806 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  U2S93_RS02105 (U2S93_02105) pilK 444867..445742 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=834710 U2S93_RS02090 WP_003084587.1 441721..442086(+) (pilH) [Pseudomonas aeruginosa strain 2023CK-01249]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=834710 U2S93_RS02090 WP_003084587.1 441721..442086(+) (pilH) [Pseudomonas aeruginosa strain 2023CK-01249]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGCCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAGTTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCGCGCGACTACCTGACCAAACCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364