Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   U2S75_RS15135 Genome accession   NZ_CP140420
Coordinates   3168647..3170668 (-) Length   673 a.a.
NCBI ID   WP_322546556.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2023CK-00893     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3163647..3175668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2S75_RS15110 (U2S75_15105) - 3163667..3164341 (-) 675 WP_000468065.1 hypothetical protein -
  U2S75_RS15115 (U2S75_15110) - 3164353..3165087 (-) 735 WP_001183838.1 hypothetical protein -
  U2S75_RS15120 (U2S75_15115) - 3165236..3166693 (-) 1458 WP_000031228.1 glyceraldehyde-3-phosphate dehydrogenase -
  U2S75_RS15125 (U2S75_15120) rarD 3166910..3167857 (-) 948 WP_169024952.1 EamA family transporter RarD -
  U2S75_RS15130 (U2S75_15125) - 3167966..3168553 (-) 588 WP_000885644.1 lipocalin family protein -
  U2S75_RS15135 (U2S75_15130) uvrB 3168647..3170668 (-) 2022 WP_322546556.1 excinuclease ABC subunit UvrB Machinery gene
  U2S75_RS15140 (U2S75_15135) - 3170848..3171639 (+) 792 WP_000222202.1 hypothetical protein -
  U2S75_RS15145 (U2S75_15140) - 3171809..3173245 (+) 1437 WP_140968381.1 diguanylate cyclase domain-containing protein -
  U2S75_RS15150 (U2S75_15145) - 3173280..3173459 (-) 180 WP_000139632.1 hypothetical protein -
  U2S75_RS15155 (U2S75_15150) - 3173667..3174902 (+) 1236 WP_070115258.1 pyridoxal phosphate-dependent aminotransferase -
  U2S75_RS15160 (U2S75_15155) - 3174954..3175364 (-) 411 WP_001014258.1 GFA family protein -

Sequence

Protein


Download         Length: 673 a.a.        Molecular weight: 77255.97 Da        Isoelectric Point: 5.2033

>NTDB_id=834673 U2S75_RS15135 WP_322546556.1 3168647..3170668(-) (uvrB) [Acinetobacter baumannii strain 2023CK-00893]
MNENQPFDLVTHYQPAGDQPQAIEKLVNGIEKGFRNQLLLGVTGSGKTYTMANVIAQTQRPTIVMAHNKTLAAQLYGEFK
AFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDAAINDHIDQMRLSATRALLERRDAIIVASVSAIYGLGDPNAYMQML
LHVVQGDRVSRDEIIRRLVEMQYTRNELEFLRGTYRIRGEIIDIFPAESDQHAIRIELFDDEVDSIRWFDPLTGKMVRKV
PRVTIYPKSHYVTPKDNLTRAIDTIKDELQDQLKFFREHDKLLEAQRIEQRTRYDLEMMQQLGYTNGIENYSRHLSGRPA
GEAPPTLFDYVPEDALLIIDESHVTVPQIGAMYKGDRSRKENLVNYGFRLPSALDNRPMKFEEWERIVPTTIFVSATPAR
YELEKSEQVVEQVVRPTGLIDPEIEVRPVLTQVDDVLSEINIRKNLNERVLVTTLTKRMAEDLTSYLKEYGVKVAYLDSD
IDTVERVKIIHELRTGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVKGKAILYADTITD
SMRKAIDETERRRAKQIEFNEQHGITPRSAVRQAVKEIDTGEVLSDDQIDEKVLEQAQALSADERHILSDPKLFSKHITK
LEKEMLKASKDLQFEQAARIRDEIVRLKAQMLQ

Nucleotide


Download         Length: 2022 bp        

>NTDB_id=834673 U2S75_RS15135 WP_322546556.1 3168647..3170668(-) (uvrB) [Acinetobacter baumannii strain 2023CK-00893]
GTGAACGAAAATCAACCTTTCGATTTGGTCACTCATTACCAGCCAGCGGGTGATCAACCACAGGCAATTGAAAAGCTGGT
GAATGGTATCGAAAAGGGTTTTCGTAATCAGTTACTGCTAGGTGTGACCGGTTCAGGTAAGACCTATACCATGGCAAATG
TGATTGCCCAAACTCAGCGCCCAACGATTGTGATGGCGCATAATAAGACCTTGGCAGCCCAGCTCTATGGTGAGTTTAAA
GCCTTCTTCCCAAACAATGCAGTTGAGTATTTCGTAAGTTATTACGACTACTATCAACCCGAGGCTTATGTTCCGTCGTC
AGATACATTTATTGAAAAAGACGCGGCAATTAATGACCATATTGACCAGATGCGATTATCGGCAACGCGTGCTTTGTTAG
AACGTCGTGATGCAATTATTGTTGCTTCTGTTTCGGCCATTTATGGTCTGGGTGACCCAAATGCTTATATGCAAATGTTA
TTGCATGTGGTCCAAGGTGACCGAGTAAGTCGAGACGAAATTATTCGCCGTTTGGTTGAAATGCAATATACGCGTAATGA
GCTTGAATTCTTACGTGGTACGTATCGTATCCGTGGTGAAATTATTGATATTTTCCCGGCAGAATCCGACCAACATGCGA
TTCGTATTGAACTCTTTGATGACGAAGTAGACTCAATTCGCTGGTTTGATCCGCTGACCGGTAAAATGGTCCGCAAAGTA
CCACGTGTCACGATTTACCCGAAAAGCCATTATGTGACGCCAAAAGACAACCTAACACGCGCTATCGATACCATTAAGGA
TGAATTGCAAGACCAGCTTAAGTTCTTCCGTGAACATGACAAGTTACTCGAAGCGCAGCGTATCGAGCAACGTACTCGTT
ATGATTTGGAAATGATGCAGCAGTTAGGGTACACCAATGGTATCGAAAACTACTCACGTCATTTATCGGGACGACCGGCA
GGTGAAGCACCACCGACCTTATTTGACTATGTACCTGAAGATGCCTTACTTATTATTGATGAGTCGCATGTAACGGTTCC
TCAAATTGGCGCAATGTATAAAGGTGACCGTTCGCGTAAAGAAAACTTGGTGAATTACGGTTTCCGTTTACCAAGTGCGC
TTGATAACCGCCCAATGAAATTTGAAGAGTGGGAGCGTATTGTTCCGACCACTATTTTTGTGAGTGCCACACCAGCTAGA
TATGAACTGGAAAAATCAGAACAAGTGGTTGAGCAGGTTGTTCGACCAACAGGCTTGATTGATCCTGAAATTGAAGTTCG
TCCGGTGCTTACCCAAGTCGATGATGTTTTGTCTGAGATTAATATTCGTAAGAACTTAAATGAGCGTGTATTGGTAACGA
CTTTAACCAAGCGTATGGCGGAAGATTTAACTTCTTATTTAAAAGAATATGGCGTTAAGGTTGCTTATCTGGACTCAGAT
ATTGATACGGTTGAACGTGTCAAAATTATTCATGAATTACGTACAGGCGTATTTGATGTACTAGTGGGTATTAACTTGCT
GCGAGAAGGCCTAGATATGCCGGAAGTTTCTTTAGTTGCTATTTTAGATGCAGATAAAGAAGGTTTCTTACGTTCTGAGC
GTTCGCTTATTCAGACAATTGGTCGTGCTGCGCGAAATGTGAAAGGTAAAGCAATTTTATATGCTGATACAATCACTGAT
TCTATGCGAAAGGCAATTGATGAGACAGAGCGCCGACGTGCAAAACAAATCGAGTTTAATGAGCAGCATGGTATTACGCC
ACGTAGTGCAGTTCGTCAGGCTGTGAAAGAAATTGATACGGGTGAAGTACTTTCTGATGATCAGATTGATGAGAAAGTAC
TAGAGCAGGCACAAGCACTTAGCGCAGATGAACGACATATTCTTTCTGACCCTAAATTGTTTAGTAAGCACATTACTAAG
CTAGAGAAAGAAATGTTAAAGGCGTCGAAGGATTTACAATTCGAGCAAGCGGCGCGTATTCGTGATGAAATTGTTCGTTT
AAAAGCGCAAATGTTGCAATAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(638-670)

UvrB interaction domain (UvrB_inter)

(161-251)

Helicase conserved C-terminal domain (Helicase_C)

(442-545)

Type III restriction enzyme, res subunit (ResIII)

(17-89)

Ultra-violet resistance protein B (UvrB)

(553-593)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.848

99.406

0.575
  uvrB Streptococcus pneumoniae R6

57.848

99.406

0.575
  uvrB Streptococcus pneumoniae D39

57.848

99.406

0.575