Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   JLC71_RS11190 Genome accession   NZ_AP024094
Coordinates   2346799..2348154 (-) Length   451 a.a.
NCBI ID   WP_200915497.1    Uniprot ID   A0A7I8ECF0
Organism   Jeongeupia sp. HS-3     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2341799..2353154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JLC71_RS11165 (JHS3_21710) argB 2342114..2342992 (+) 879 WP_200915492.1 acetylglutamate kinase -
  JLC71_RS11170 (JHS3_21720) - 2343126..2343557 (+) 432 WP_200915493.1 CBS domain-containing protein -
  JLC71_RS11175 (JHS3_21730) - 2343588..2344241 (+) 654 WP_200915494.1 pyrimidine 5'-nucleotidase -
  JLC71_RS11180 (JHS3_21740) - 2344292..2346139 (-) 1848 WP_236250872.1 potassium transporter Kup -
  JLC71_RS11185 (JHS3_21750) ampD 2346233..2346802 (-) 570 WP_200915496.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  JLC71_RS11190 (JHS3_21760) pilR 2346799..2348154 (-) 1356 WP_200915497.1 sigma-54 dependent transcriptional regulator Regulator
  JLC71_RS11195 (JHS3_21770) - 2348135..2349721 (-) 1587 WP_200915498.1 PAS domain-containing sensor histidine kinase -
  JLC71_RS11200 (JHS3_21780) - 2349762..2350259 (-) 498 WP_200915499.1 RNA pyrophosphohydrolase -
  JLC71_RS11205 (JHS3_21790) - 2350413..2351201 (-) 789 WP_200915500.1 fused MFS/spermidine synthase -
  JLC71_RS11210 (JHS3_21800) ttcA 2351201..2352145 (-) 945 WP_200915501.1 tRNA 2-thiocytidine(32) synthetase TtcA -
  JLC71_RS11215 (JHS3_21810) - 2352215..2352955 (-) 741 WP_200915502.1 pteridine reductase -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 49409.32 Da        Isoelectric Point: 4.9969

>NTDB_id=83463 JLC71_RS11190 WP_200915497.1 2346799..2348154(-) (pilR) [Jeongeupia sp. HS-3]
MARKPRNNRRVLVVDDEADLADLLELTLVKLGLDVDKANNVASARGLLDTRNYDLVLTDMRMPDGEGLDLLRHVQSARLD
VPIAVITAYGSTDNAVAALKAGAFDYLAKPVSLDQLRTLVKSALRLDDDAEPLPQDGDRPLLGDSAAIRQVHELVGKLAR
SQAPVYVTGESGSGKERAARLIHAQSARTDKAFIAVNCGAIPENLVESEFFGYRKGAFTGADSDRDGFFQAANGGTLFLD
EVADLPLAMQVKLLRVIQERKVRKVGSTIEEAVDVRLISATHQNLADCVEAGRFRLDLYYRLNVIELKMPPLREMADDIV
LLARHILARLAANNGVDAPLFAAESLAALSRYHFPGNVRELENMLERALALSDGATITPYDLQLDREDVELVDADGGGLQ
DYLDRLEKQAILETIEKTNGNRTQAAKLLGVTFRSLRYRMDRLGLAGKVEA

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=83463 JLC71_RS11190 WP_200915497.1 2346799..2348154(-) (pilR) [Jeongeupia sp. HS-3]
ATGGCCAGGAAACCCCGTAACAACCGCCGCGTCCTCGTCGTGGACGACGAAGCCGATCTCGCCGATCTGCTTGAGCTGAC
GCTGGTGAAGCTTGGCCTCGATGTCGACAAGGCCAACAACGTCGCCTCGGCGCGAGGGCTGCTCGACACGCGTAACTACG
ACCTTGTGCTGACCGACATGCGCATGCCCGATGGTGAGGGACTCGATCTGCTGCGCCATGTGCAGAGCGCGCGGCTCGAT
GTGCCGATCGCGGTGATCACTGCCTACGGTAGTACCGACAACGCCGTTGCGGCGCTCAAGGCCGGGGCGTTTGATTATCT
GGCCAAGCCGGTCTCGCTGGATCAGTTGCGCACCCTGGTCAAATCCGCCTTGCGGCTCGATGATGACGCCGAGCCGCTGC
CGCAAGACGGCGACCGCCCCTTGCTGGGCGATTCCGCCGCGATCCGCCAGGTACACGAGCTGGTGGGCAAACTCGCCAGG
AGTCAGGCGCCGGTCTACGTCACCGGCGAATCCGGTAGCGGCAAGGAGCGTGCGGCGCGGCTGATCCACGCCCAGTCGGC
GCGTACCGACAAGGCGTTTATCGCGGTGAACTGCGGCGCGATTCCGGAGAACCTGGTCGAGAGCGAATTCTTCGGCTATC
GCAAGGGCGCGTTCACCGGCGCCGATAGCGACCGGGACGGATTTTTCCAGGCGGCCAACGGCGGCACGCTGTTCCTCGAC
GAGGTCGCCGATCTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGGGTGATTCAGGAGCGCAAGGTACGCAAAGTGGGTAG
CACCATCGAGGAAGCCGTCGACGTGCGGCTGATCTCGGCCACCCACCAGAATCTGGCCGATTGCGTCGAGGCGGGTCGCT
TCCGGCTCGATCTGTATTACCGGCTCAATGTGATCGAGCTGAAAATGCCACCGCTGCGCGAGATGGCCGACGATATTGTC
TTGCTGGCCCGGCACATCCTGGCGCGGCTGGCGGCAAACAACGGCGTTGATGCACCGCTGTTCGCTGCGGAATCGCTGGC
GGCGCTGTCGCGCTATCACTTCCCCGGCAATGTGCGCGAGCTGGAGAACATGCTCGAGCGCGCGCTGGCGCTGTCCGATG
GCGCGACGATCACGCCGTACGATCTGCAGCTTGACCGTGAAGATGTCGAACTCGTCGATGCCGATGGCGGTGGCCTGCAG
GATTATCTGGATCGGCTGGAGAAACAGGCCATTCTGGAAACGATAGAAAAAACCAACGGCAACCGTACCCAGGCGGCCAA
GTTGCTCGGGGTGACCTTCCGCAGCCTGCGCTACCGGATGGACAGACTCGGCCTCGCCGGCAAGGTCGAGGCATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(403-442)

Response regulator receiver domain (Response_reg)

(11-120)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7I8ECF0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

55.928

99.113

0.554
  pilR Acinetobacter baumannii strain A118

45.572

100

0.468
  luxO Vibrio cholerae strain A1552

40.94

99.113

0.406

Multiple sequence alignment