Detailed information NTG0083440

Bioinformatically predicted

Overview

• Name: comR
• Type: Regulator
• Locus tag: R8568_RS09380
• Genome accession: NZ_AP026931
• Coordinates: 1839988..1840899 (-)
• Length: 303 a.a.
• NCBI ID: WP_000904856.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain PZ900701541
• Function: activate transcription of comX (predicted from homology) Competence regulation

Genomic Context

Location: 1834988..1845899

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8568_RS09355 (PC1520_18360)	rsmA	1835318..1836190 (-)	873	WP_317640184.1	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	-
R8568_RS09360 (PC1520_18370)	-	1836321..1836629 (-)	309	WP_000333257.1	hypothetical protein	-
R8568_RS09365 (PC1520_18380)	-	1836622..1837263 (-)	642	WP_000565533.1	ABC transporter ATP-binding protein	-
R8568_RS09370 (PC1520_18390)	-	1837265..1839295 (-)	2031	WP_000825279.1	bacteriocin-associated integral membrane family protein	-
R8568_RS09375 (PC1520_18400)	-	1839372..1839668 (-)	297	WP_000815394.1	lactococcin 972 family bacteriocin	-
R8568_RS09380 (PC1520_18410)	comR	1839988..1840899 (-)	912	WP_000904856.1	XRE family transcriptional regulator	Regulator
R8568_RS09385 (PC1520_18420)	rnmV	1840971..1841531 (-)	561	WP_000660011.1	ribonuclease M5	-
R8568_RS09390 (PC1520_18430)	-	1841531..1842304 (-)	774	WP_317640193.1	TatD family hydrolase	-
R8568_RS09395 (PC1520_18440)	-	1842609..1843586 (-)	978	Protein_1839	DUF1542 domain-containing protein	-
R8568_RS09400 (PC1520_18450)	rpmH	1843792..1843926 (-)	135	WP_000831905.1	50S ribosomal protein L34	-
R8568_RS09405 (PC1520_18460)	-	1844071..1845285 (-)	1215	WP_000666469.1	pyridoxal phosphate-dependent aminotransferase	-
R8568_RS09410	-	1845441..1845734 (-)	294	WP_000977365.1	hypothetical protein	-

Sequence

Protein

• Length: 303 a.a.
• Molecular weight: 35479.78 Da
• Isoelectric Point: 4.5324

>NTDB_id=83440 R8568_RS09380 WP_000904856.1 1839988..1840899(-) (comR) [Streptococcus pneumoniae strain PZ900701541]
MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVYSLMPDFSALPSAYLELKYQI
LREPIYGKEEEYDKKEACLEEIEDLFYEQLPNEEKVWFEATRATIDVIRSGRPEYGETVLDDYFKTIYDKELFLINELEV
INLYFAIVLTKIKQGQNQIEEINRIHSFLVRLTNHVELIAPEYLFALSNTLFSGLACLDNLSSYDSLGAYIFSLNHIMEK
TQDFQKKPIILMLEWKLSLIINNDYVSAEQFYQKSKLFADIIENSYLVTMLEKQWQEDLKKYL

Nucleotide

• Length: 912 bp

>NTDB_id=83440 R8568_RS09380 WP_000904856.1 1839988..1840899(-) (comR) [Streptococcus pneumoniae strain PZ900701541]
ATGTTAATTGGTCAAAAAATTAAAGAGATTCGGATAGAAAAAGGAATTAGTCGTCCAGATTTTTGTGGAGATGAGCAAGA
ACTGACAGTTCGTCAACTGTCGCGAATTGAAAGTGGAGCTTCGCAACCGAGTTTGCCCAAGTTAGACTATATTGCTCGCC
GGCTAGGAGTTCCAGTTTATAGCCTTATGCCGGATTTTTCAGCTCTTCCTTCTGCTTATTTAGAATTGAAATACCAGATT
TTACGTGAACCAATCTATGGTAAAGAAGAGGAGTACGATAAGAAGGAAGCGTGTTTGGAAGAGATAGAGGATTTATTTTA
TGAGCAACTTCCTAATGAGGAAAAAGTATGGTTTGAAGCTACTAGAGCAACGATAGATGTTATTCGAAGTGGACGACCAG
AATACGGGGAAACCGTACTGGACGATTATTTTAAAACAATTTATGATAAGGAATTGTTTTTGATAAATGAATTAGAAGTT
ATCAACTTATATTTTGCTATAGTGCTTACAAAGATAAAACAAGGTCAAAATCAGATTGAAGAAATTAACAGAATTCATTC
GTTTTTAGTTCGTTTGACAAATCATGTAGAATTAATTGCACCAGAATATCTGTTTGCTTTAAGTAACACTTTGTTTTCGG
GTCTAGCCTGTTTGGATAACTTGTCATCTTATGATTCACTAGGAGCTTATATCTTTAGCCTTAATCATATAATGGAAAAA
ACACAAGATTTCCAGAAGAAACCAATTATATTAATGTTGGAGTGGAAATTATCTCTAATAATAAACAATGATTATGTTTC
TGCCGAACAGTTCTATCAGAAATCGAAGCTATTTGCTGATATAATAGAAAATTCTTATTTAGTTACTATGTTAGAAAAAC
AATGGCAAGAAGATTTAAAAAAATATTTATAA

Domains

Predicted by InterProScan.

• ComR tetratricopeptide (ComR_TPR) (70-295)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comR	Streptococcus mutans UA159	39.189	97.69	0.383
comR	Streptococcus pyogenes MGAS8232	37.5	100	0.376
comR	Streptococcus suis P1/7	37.627	97.36	0.366
comR	Streptococcus suis 05ZYH33	37.627	97.36	0.366