Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   QMY54_RS14520 Genome accession   NZ_CP125986
Coordinates   2524984..2527209 (+) Length   741 a.a.
NCBI ID   WP_284185387.1    Uniprot ID   -
Organism   Pseudomonas rhodesiae strain 3.8     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2519984..2532209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY54_RS14505 (QMY54_02904) - 2522257..2522973 (+) 717 WP_034114157.1 response regulator transcription factor -
  QMY54_RS14510 (QMY54_02905) - 2522960..2524330 (+) 1371 WP_034114155.1 sensor histidine kinase -
  QMY54_RS14515 (QMY54_02906) - 2524334..2524849 (-) 516 WP_034098616.1 DUF2062 domain-containing protein -
  QMY54_RS14520 (QMY54_02907) comA 2524984..2527209 (+) 2226 WP_284185387.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QMY54_RS14525 (QMY54_02908) exbB 2527309..2527944 (+) 636 WP_034098613.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QMY54_RS14530 (QMY54_02909) - 2527941..2528369 (+) 429 WP_034098611.1 biopolymer transporter ExbD -
  QMY54_RS14535 (QMY54_02910) lpxK 2528369..2529379 (+) 1011 WP_034098609.1 tetraacyldisaccharide 4'-kinase -
  QMY54_RS14540 (QMY54_02911) - 2529403..2529588 (+) 186 WP_011060103.1 Trm112 family protein -
  QMY54_RS14545 (QMY54_02912) kdsB 2529585..2530349 (+) 765 WP_034098606.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QMY54_RS14550 (QMY54_02913) - 2530349..2530813 (+) 465 WP_034114149.1 low molecular weight protein-tyrosine-phosphatase -
  QMY54_RS14555 (QMY54_02914) murB 2530810..2531829 (+) 1020 WP_034098603.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80607.70 Da        Isoelectric Point: 10.8854

>NTDB_id=834118 QMY54_RS14520 WP_284185387.1 2524984..2527209(+) (comA) [Pseudomonas rhodesiae strain 3.8]
MKTGMFALASGLLALVFLPALPATGWLIAMLLLALMALPFRTYPLAFFLMGLSWACFSAQWALNDRLSLKLDGQTRWVEG
WVAGLPQQTDDGVRFDLIDGRSRKARLPQRIRVSWRGGPPVRSGERWRLAISLKRPSGLLNFHGFDREAWLLAQRIGATG
SVKDGERLVPARNAWRDGLRQRLLAVDAQGREASLAALVLGDGSGLSATDWQILQDTGTVHLLVISGQHIGLLAGLIYWL
IAGLARYGVWPRGWPWLPWACGLAFAAALSYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLAFNGVLILEPL
ASLQAGFWLSFAAVAVLILAFSGRLGPWSPWQVWTRPQCVIAIGLFPVLLVLGLPISMSAPLANLVAVPWISLVVLPLAL
LGTALLAVPFVGEGLLWLAGGALQGLFVGLGWLAEYAPAWVPAQVPWAAWLISLLGAVLLLLPKGVPLRLLGWPMLLLAV
FPPREPVPYGQVEVLQLDVGQGQSLILRTRNHTLVYDAGPRSGALDLGARVVLPSLKKLGVGSLDLLLLSHADADHAGGA
AALARGMPIRRVVGGETEGLPAFLGTQPCVSGEQWQWDGVMFEMWQWPDAIGGNAKSCVLQVQANGERLLLTGDIDRDAE
RALLNSPLAVPTHWLQAPHHGSRSSSSRPFLQRLAPRSVLISRGRGNAFGHPHPQVMERYRALGSRVYDSAEQGAVRVQL
GAFAEPVVARGQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=834118 QMY54_RS14520 WP_284185387.1 2524984..2527209(+) (comA) [Pseudomonas rhodesiae strain 3.8]
ATGAAGACAGGGATGTTCGCGCTTGCATCAGGGCTGCTTGCTCTGGTTTTTCTACCGGCACTGCCCGCAACGGGCTGGCT
GATCGCCATGCTGCTGCTGGCGTTGATGGCGTTGCCATTTCGCACGTACCCGCTGGCGTTTTTTCTGATGGGGTTGAGTT
GGGCGTGTTTCAGCGCGCAGTGGGCCTTGAATGATCGGCTGTCGCTGAAGCTGGATGGGCAGACGCGTTGGGTCGAGGGC
TGGGTGGCCGGGTTACCGCAACAGACCGATGATGGCGTGCGCTTCGACCTGATCGACGGGCGGTCGCGTAAAGCCCGATT
ACCCCAGCGCATCCGCGTGTCCTGGCGCGGAGGTCCGCCCGTGCGCAGCGGTGAACGCTGGCGCCTGGCAATCAGCCTCA
AACGACCGTCCGGATTACTGAATTTTCACGGCTTTGACCGCGAAGCCTGGCTGCTGGCCCAGCGCATCGGTGCAACCGGC
TCGGTAAAGGACGGTGAGCGCCTGGTCCCAGCGCGCAATGCGTGGCGCGATGGCCTGCGTCAACGGTTGCTGGCCGTGGA
TGCCCAAGGCCGCGAGGCGAGCCTGGCCGCCCTGGTGCTGGGGGATGGCTCCGGTCTGTCCGCTACGGATTGGCAGATTC
TGCAGGACACCGGCACCGTGCATCTGCTGGTGATTTCCGGGCAGCACATCGGCCTGTTGGCGGGGTTGATCTACTGGCTG
ATTGCCGGGTTGGCTCGTTACGGAGTTTGGCCGCGAGGTTGGCCATGGCTACCCTGGGCGTGCGGCCTGGCCTTTGCCGC
TGCGCTCAGTTACGGCTTGCTGGCCGGGTTCGGTGTGCCGGTGCAGCGCGCGTGCGTGATGGTGGGGTTGGTCCTGCTCT
GGCGTTTGCGCTTTCGCCATCTGGGCGTGTGGTGGCCGTTGCTGCTGGCCTTCAATGGGGTGCTGATCCTGGAACCCCTG
GCCAGTCTGCAGGCGGGTTTCTGGCTATCATTTGCGGCAGTGGCGGTGCTGATCCTGGCGTTCAGCGGCCGCTTAGGACC
GTGGAGCCCTTGGCAGGTGTGGACCCGTCCGCAATGCGTGATCGCCATCGGGCTGTTTCCGGTGTTGTTGGTGCTGGGGT
TGCCCATCAGTATGAGTGCGCCGCTGGCCAATCTGGTGGCGGTGCCGTGGATCAGCCTGGTGGTGCTGCCACTGGCGCTG
CTGGGCACTGCGCTGTTGGCGGTGCCCTTCGTGGGGGAGGGTTTGTTGTGGCTGGCGGGTGGCGCGCTGCAGGGGTTATT
CGTCGGCTTGGGTTGGCTCGCCGAATACGCGCCCGCTTGGGTACCGGCGCAGGTGCCCTGGGCGGCCTGGCTGATCAGCC
TGCTCGGCGCGGTGTTGCTGTTATTGCCCAAAGGCGTGCCGCTGCGCCTGCTGGGTTGGCCGATGCTGTTGCTGGCCGTG
TTCCCTCCTCGAGAACCGGTGCCCTATGGGCAGGTCGAGGTGCTGCAGTTGGACGTCGGTCAAGGGCAATCGCTGATTCT
GCGCACACGCAATCACACCCTGGTTTACGATGCTGGCCCACGTTCGGGAGCGCTCGACCTCGGCGCGCGCGTGGTGCTGC
CGTCGTTGAAAAAACTCGGCGTGGGCAGCTTGGACCTGCTATTGCTCAGCCATGCCGATGCCGATCACGCGGGGGGCGCG
GCCGCATTGGCCCGAGGCATGCCGATCAGGCGCGTGGTAGGCGGCGAAACCGAGGGCTTGCCGGCGTTTTTGGGCACCCA
GCCTTGTGTCAGTGGCGAGCAGTGGCAATGGGACGGGGTCATGTTTGAAATGTGGCAGTGGCCTGATGCTATTGGCGGCA
ACGCGAAATCCTGCGTCTTGCAGGTGCAAGCCAACGGTGAGCGTCTGCTGCTGACCGGCGATATCGATCGCGACGCTGAA
CGGGCGCTGCTCAACTCGCCGCTGGCGGTGCCCACCCACTGGCTGCAAGCGCCGCATCATGGCAGTCGAAGTTCGTCCTC
CAGGCCTTTCTTGCAACGGCTGGCACCCCGGTCTGTGCTTATTTCACGCGGGCGCGGCAACGCCTTCGGTCATCCCCATC
CGCAGGTCATGGAGCGCTATCGGGCACTCGGCAGCCGGGTCTATGACAGCGCCGAACAAGGCGCCGTACGCGTGCAATTA
GGGGCGTTTGCCGAACCGGTCGTTGCCCGTGGTCAACGGCGTTTCTGGCGCGAACGGTTACCCTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Competence protein (Competence)

(198-463)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.583

97.166

0.579
  comA Ralstonia pseudosolanacearum GMI1000

34.582

100

0.374