Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QMY54_RS14525 Genome accession   NZ_CP125986
Coordinates   2527309..2527944 (+) Length   211 a.a.
NCBI ID   WP_034098613.1    Uniprot ID   A0A2G0X9Z2
Organism   Pseudomonas rhodesiae strain 3.8     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2522309..2532944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY54_RS14510 (QMY54_02905) - 2522960..2524330 (+) 1371 WP_034114155.1 sensor histidine kinase -
  QMY54_RS14515 (QMY54_02906) - 2524334..2524849 (-) 516 WP_034098616.1 DUF2062 domain-containing protein -
  QMY54_RS14520 (QMY54_02907) comA 2524984..2527209 (+) 2226 WP_284185387.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QMY54_RS14525 (QMY54_02908) exbB 2527309..2527944 (+) 636 WP_034098613.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QMY54_RS14530 (QMY54_02909) - 2527941..2528369 (+) 429 WP_034098611.1 biopolymer transporter ExbD -
  QMY54_RS14535 (QMY54_02910) lpxK 2528369..2529379 (+) 1011 WP_034098609.1 tetraacyldisaccharide 4'-kinase -
  QMY54_RS14540 (QMY54_02911) - 2529403..2529588 (+) 186 WP_011060103.1 Trm112 family protein -
  QMY54_RS14545 (QMY54_02912) kdsB 2529585..2530349 (+) 765 WP_034098606.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QMY54_RS14550 (QMY54_02913) - 2530349..2530813 (+) 465 WP_034114149.1 low molecular weight protein-tyrosine-phosphatase -
  QMY54_RS14555 (QMY54_02914) murB 2530810..2531829 (+) 1020 WP_034098603.1 UDP-N-acetylmuramate dehydrogenase -
  QMY54_RS14560 (QMY54_02915) - 2531892..2532563 (-) 672 WP_034114146.1 Bax inhibitor-1/YccA family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22827.95 Da        Isoelectric Point: 6.8765

>NTDB_id=834119 QMY54_RS14525 WP_034098613.1 2527309..2527944(+) (exbB) [Pseudomonas rhodesiae strain 3.8]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWSWIKNKQLDKEKLKALRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGTGMSANAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLVGDKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=834119 QMY54_RS14525 WP_034098613.1 2527309..2527944(+) (exbB) [Pseudomonas rhodesiae strain 3.8]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCTTGAGTTCCATCGCCGCGCTCGGCATCGTTGC
CGAACGTCTGTGGACCCTGCGTGCCAGTCGTGTCACCCCTGAGCATCTGCTGGGGCAGGTCTGGTCCTGGATCAAGAACA
AACAACTGGACAAGGAAAAGCTCAAGGCCCTGCGCGCCGATTCGCCGCTGGGTGAGATTCTGGCCGCGGGCCTGGCCAAC
TCCAAGCACGGTCGTGAGATCATGAAGGAGTGCATCGAAGAGGCCGCCGCGCGGGTGATCCACGAACTGGAGCGCTATAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGCTCGGTTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GTTCGTTCATGGGCACCGGTATGAGCGCTAACGCGGCCGTGCTGGCCGGTGGTATTTCCAAGGCGCTGATTACCACGGCG
GCGGGCTTGATGGTGGGGATTCCATCGGTGTTCTTCCACCGGTTCCTGCAACGGCGCGTCGATGAGCTGGTGGTAGGCAT
GGAGCAGGAAGCCATCAAGCTGGTAGAGGTGGTGCAGGGGGATCGCGACGTGGATCTGGTTGGGGACAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G0X9Z2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853