Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | VNTUMSATTG_RS17180 | Genome accession | NZ_AP024087 |
| Coordinates | 3737022..3737582 (-) | Length | 186 a.a. |
| NCBI ID | WP_004405329.1 | Uniprot ID | U4KA40 |
| Organism | Vibrio nigripulchritudo strain TUMSAT-TG-2018 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3732022..3742582
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VNTUMSATTG_RS17155 (VNTUMSATTG_33350) | aroB | 3732332..3733420 (-) | 1089 | WP_004405321.1 | 3-dehydroquinate synthase | - |
| VNTUMSATTG_RS17160 (VNTUMSATTG_33360) | aroK | 3733443..3733961 (-) | 519 | WP_004405322.1 | shikimate kinase AroK | - |
| VNTUMSATTG_RS17165 (VNTUMSATTG_33370) | pilQ | 3734151..3735896 (-) | 1746 | WP_200766247.1 | type IV pilus secretin PilQ | Machinery gene |
| VNTUMSATTG_RS17170 (VNTUMSATTG_33380) | pilP | 3735933..3736445 (-) | 513 | WP_022593066.1 | pilus assembly protein PilP | Machinery gene |
| VNTUMSATTG_RS17175 (VNTUMSATTG_33390) | pilO | 3736438..3737025 (-) | 588 | WP_004405328.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| VNTUMSATTG_RS17180 (VNTUMSATTG_33400) | pilN | 3737022..3737582 (-) | 561 | WP_004405329.1 | PilN domain-containing protein | Machinery gene |
| VNTUMSATTG_RS17185 (VNTUMSATTG_33410) | pilM | 3737575..3738591 (-) | 1017 | WP_200766248.1 | type IV pilus assembly protein PilM | Machinery gene |
| VNTUMSATTG_RS17190 (VNTUMSATTG_33420) | - | 3738737..3741235 (+) | 2499 | WP_200766249.1 | penicillin-binding protein 1A | - |
| VNTUMSATTG_RS17195 (VNTUMSATTG_33430) | oxyR | 3741291..3742172 (-) | 882 | WP_004405335.1 | DNA-binding transcriptional regulator OxyR | - |
Sequence
Protein
Download Length: 186 a.a. Molecular weight: 21363.47 Da Isoelectric Point: 7.4657
>NTDB_id=83402 VNTUMSATTG_RS17180 WP_004405329.1 3737022..3737582(-) (pilN) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
MHSVNLLPWRDEMRARYRRQFFSYLAAAILAAVGVQWGVGVYFSQQMSVQEERNAELTRHISYLDQQLRGLSEVRDQHES
ILTRLRSVEALQIKRNKTTDFMSHLPDTIPPGVYVDKIEMNDFEVEVNGISDSTANITTMLDSMERSAKLADVEMHSIVS
GKKLFGKVFKTFKVSFIFAPIKEEKS
MHSVNLLPWRDEMRARYRRQFFSYLAAAILAAVGVQWGVGVYFSQQMSVQEERNAELTRHISYLDQQLRGLSEVRDQHES
ILTRLRSVEALQIKRNKTTDFMSHLPDTIPPGVYVDKIEMNDFEVEVNGISDSTANITTMLDSMERSAKLADVEMHSIVS
GKKLFGKVFKTFKVSFIFAPIKEEKS
Nucleotide
Download Length: 561 bp
>NTDB_id=83402 VNTUMSATTG_RS17180 WP_004405329.1 3737022..3737582(-) (pilN) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
ATGCATAGCGTTAACTTACTGCCCTGGCGTGATGAAATGCGCGCCAGATACCGCCGCCAATTTTTTTCTTATCTGGCTGC
CGCGATACTTGCCGCAGTCGGAGTTCAGTGGGGTGTTGGTGTTTATTTCTCACAACAAATGAGTGTTCAGGAAGAACGCA
ATGCTGAGCTGACTCGCCACATCTCCTACTTAGACCAGCAACTACGCGGTTTGAGTGAGGTTCGCGATCAGCACGAGTCT
ATTCTTACCCGACTGCGCTCGGTCGAGGCGCTTCAAATCAAGCGCAACAAAACCACAGATTTTATGTCCCACCTGCCAGA
TACCATTCCACCGGGTGTTTACGTCGACAAAATTGAAATGAACGATTTTGAAGTTGAAGTGAATGGCATCAGTGACAGCA
CAGCCAATATCACCACAATGCTCGACAGTATGGAGCGCTCCGCCAAGCTGGCAGATGTGGAAATGCACTCCATTGTTTCG
GGTAAGAAGTTGTTTGGCAAAGTATTCAAAACCTTCAAAGTATCCTTCATTTTTGCGCCTATCAAGGAAGAAAAGTCATG
A
ATGCATAGCGTTAACTTACTGCCCTGGCGTGATGAAATGCGCGCCAGATACCGCCGCCAATTTTTTTCTTATCTGGCTGC
CGCGATACTTGCCGCAGTCGGAGTTCAGTGGGGTGTTGGTGTTTATTTCTCACAACAAATGAGTGTTCAGGAAGAACGCA
ATGCTGAGCTGACTCGCCACATCTCCTACTTAGACCAGCAACTACGCGGTTTGAGTGAGGTTCGCGATCAGCACGAGTCT
ATTCTTACCCGACTGCGCTCGGTCGAGGCGCTTCAAATCAAGCGCAACAAAACCACAGATTTTATGTCCCACCTGCCAGA
TACCATTCCACCGGGTGTTTACGTCGACAAAATTGAAATGAACGATTTTGAAGTTGAAGTGAATGGCATCAGTGACAGCA
CAGCCAATATCACCACAATGCTCGACAGTATGGAGCGCTCCGCCAAGCTGGCAGATGTGGAAATGCACTCCATTGTTTCG
GGTAAGAAGTTGTTTGGCAAAGTATTCAAAACCTTCAAAGTATCCTTCATTTTTGCGCCTATCAAGGAAGAAAAGTCATG
A
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
52.406 |
100 |
0.527 |
| pilN | Vibrio cholerae strain A1552 |
53.591 |
97.312 |
0.522 |