Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   VNTUMSATTG_RS17170 Genome accession   NZ_AP024087
Coordinates   3735933..3736445 (-) Length   170 a.a.
NCBI ID   WP_022593066.1    Uniprot ID   -
Organism   Vibrio nigripulchritudo strain TUMSAT-TG-2018     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3730933..3741445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNTUMSATTG_RS17155 (VNTUMSATTG_33350) aroB 3732332..3733420 (-) 1089 WP_004405321.1 3-dehydroquinate synthase -
  VNTUMSATTG_RS17160 (VNTUMSATTG_33360) aroK 3733443..3733961 (-) 519 WP_004405322.1 shikimate kinase AroK -
  VNTUMSATTG_RS17165 (VNTUMSATTG_33370) pilQ 3734151..3735896 (-) 1746 WP_200766247.1 type IV pilus secretin PilQ Machinery gene
  VNTUMSATTG_RS17170 (VNTUMSATTG_33380) pilP 3735933..3736445 (-) 513 WP_022593066.1 pilus assembly protein PilP Machinery gene
  VNTUMSATTG_RS17175 (VNTUMSATTG_33390) pilO 3736438..3737025 (-) 588 WP_004405328.1 type 4a pilus biogenesis protein PilO Machinery gene
  VNTUMSATTG_RS17180 (VNTUMSATTG_33400) pilN 3737022..3737582 (-) 561 WP_004405329.1 PilN domain-containing protein Machinery gene
  VNTUMSATTG_RS17185 (VNTUMSATTG_33410) pilM 3737575..3738591 (-) 1017 WP_200766248.1 type IV pilus assembly protein PilM Machinery gene
  VNTUMSATTG_RS17190 (VNTUMSATTG_33420) - 3738737..3741235 (+) 2499 WP_200766249.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18587.82 Da        Isoelectric Point: 10.9516

>NTDB_id=83400 VNTUMSATTG_RS17170 WP_022593066.1 3735933..3736445(-) (pilP) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
MNKALLGIMVVVALSGCRANQEPLQDFILKTQQSASTQVSKLQAEQTFKASEFNPLSTRAPFALPKIAVVQTQPSLVKDC
WQPSSRRKNGKLERFALTQLQLKGVMGSGNSVSGIIQVPTGQVVKVKKGHYLGLNNGKIIKITPKHLTIQETLPDGLGCW
QQRNVKLALK

Nucleotide


Download         Length: 513 bp        

>NTDB_id=83400 VNTUMSATTG_RS17170 WP_022593066.1 3735933..3736445(-) (pilP) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
ATGAATAAAGCACTATTGGGAATCATGGTAGTGGTGGCTTTATCCGGATGTCGCGCCAATCAGGAGCCGCTGCAGGATTT
CATCTTAAAAACACAGCAAAGTGCCTCGACACAAGTATCAAAGCTGCAGGCAGAGCAAACCTTTAAAGCCAGTGAATTCA
ATCCGTTGTCGACACGAGCACCGTTTGCGTTGCCTAAGATTGCGGTCGTTCAGACTCAGCCTTCACTGGTTAAAGATTGC
TGGCAGCCCTCTTCACGACGCAAAAATGGCAAGCTGGAACGCTTTGCTCTCACTCAGCTTCAGTTGAAAGGCGTGATGGG
AAGTGGGAACTCTGTTTCGGGCATCATCCAGGTGCCTACCGGTCAGGTCGTCAAAGTGAAGAAAGGACACTATCTCGGGC
TGAACAACGGCAAGATCATCAAGATAACACCTAAGCATCTCACCATTCAGGAAACCTTGCCTGATGGGTTGGGGTGCTGG
CAGCAGCGTAACGTTAAGCTCGCGTTGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(24-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

55.03

99.412

0.547
  pilP Vibrio cholerae strain A1552

52.353

100

0.524

Multiple sequence alignment