Detailed information NTG0083403

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: VNTUMSATTG_RS17185
• Genome accession: NZ_AP024087
• Coordinates: 3737575..3738591 (-)
• Length: 338 a.a.
• NCBI ID: WP_200766248.1
• Uniprot ID: -
• Organism: Vibrio nigripulchritudo strain TUMSAT-TG-2018
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3732575..3743591

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VNTUMSATTG_RS17160 (VNTUMSATTG_33360)	aroK	3733443..3733961 (-)	519	WP_004405322.1	shikimate kinase AroK	-
VNTUMSATTG_RS17165 (VNTUMSATTG_33370)	pilQ	3734151..3735896 (-)	1746	WP_200766247.1	type IV pilus secretin PilQ	Machinery gene
VNTUMSATTG_RS17170 (VNTUMSATTG_33380)	pilP	3735933..3736445 (-)	513	WP_022593066.1	pilus assembly protein PilP	Machinery gene
VNTUMSATTG_RS17175 (VNTUMSATTG_33390)	pilO	3736438..3737025 (-)	588	WP_004405328.1	type 4a pilus biogenesis protein PilO	Machinery gene
VNTUMSATTG_RS17180 (VNTUMSATTG_33400)	pilN	3737022..3737582 (-)	561	WP_004405329.1	PilN domain-containing protein	Machinery gene
VNTUMSATTG_RS17185 (VNTUMSATTG_33410)	pilM	3737575..3738591 (-)	1017	WP_200766248.1	type IV pilus assembly protein PilM	Machinery gene
VNTUMSATTG_RS17190 (VNTUMSATTG_33420)	-	3738737..3741235 (+)	2499	WP_200766249.1	penicillin-binding protein 1A	-
VNTUMSATTG_RS17195 (VNTUMSATTG_33430)	oxyR	3741291..3742172 (-)	882	WP_004405335.1	DNA-binding transcriptional regulator OxyR	-
VNTUMSATTG_RS17200 (VNTUMSATTG_33440)	-	3742351..3743082 (+)	732	WP_004405337.1	glutathione peroxidase	-

Sequence

Protein

• Length: 338 a.a.
• Molecular weight: 37126.37 Da
• Isoelectric Point: 6.4160

>NTDB_id=83403 VNTUMSATTG_RS17185 WP_200766248.1 3737575..3738591(-) (pilM) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
MGRSLVVGIDFGHHSIKAVAMKPIGELMQLVGYNELTVPEDIFSENHTLDYQKIVKKLKELKKGLPLFSQQVAVSVPDKA
VISKVLQIEQDMDGREQEFAVHQAFGQQSPIPLEELSLDFFEVDQKVTTRSTTSTFQVYATRKEVVDSRVAALTKAGLKP
LTVDVHANSLLKVWRLASQVHPERRQWMLVDIGLNQTSLCTVAAGRTPFYKEVPFGTQNVAQSQEISESISLSSDSLTQG
FVRELGEKLQRHISLYNSVNPQQNVDGIWLSGGGANLVGITDMLSSELSLEVAQLNPFGLVENGTKKSIKQLSDSAAYGV
AMGLAISGVEWLKGNHHA

Nucleotide

• Length: 1017 bp

>NTDB_id=83403 VNTUMSATTG_RS17185 WP_200766248.1 3737575..3738591(-) (pilM) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
ATGGGTAGATCTTTAGTAGTTGGCATCGATTTCGGTCATCACAGTATCAAAGCTGTCGCCATGAAACCCATTGGCGAGCT
AATGCAACTTGTTGGTTATAATGAGCTTACTGTACCCGAAGATATTTTCTCTGAAAACCATACGCTCGATTATCAGAAGA
TTGTAAAGAAACTCAAAGAACTTAAAAAGGGCTTGCCTCTTTTTAGTCAACAAGTCGCAGTTTCCGTACCAGACAAGGCT
GTTATCAGCAAAGTTCTGCAAATTGAACAGGATATGGACGGCAGAGAACAAGAGTTTGCCGTTCATCAGGCTTTTGGCCA
GCAGTCTCCCATTCCATTGGAAGAGTTGAGTTTAGACTTCTTCGAAGTGGATCAAAAAGTCACCACGCGAAGCACCACAT
CTACCTTTCAGGTTTATGCTACTCGCAAAGAAGTGGTTGATTCGCGAGTTGCGGCATTAACGAAAGCAGGGTTAAAGCCT
TTGACGGTTGATGTGCACGCCAACAGCCTATTAAAAGTCTGGCGTCTTGCCAGTCAGGTTCATCCGGAACGCCGACAGTG
GATGCTGGTGGATATCGGGTTGAATCAAACGTCTTTATGCACGGTTGCCGCGGGAAGAACCCCTTTCTATAAAGAAGTGC
CTTTCGGTACCCAGAACGTGGCTCAGTCACAAGAAATTTCTGAATCCATCTCTTTAAGCAGCGATTCTCTTACACAAGGG
TTTGTCAGAGAGTTAGGCGAAAAGCTGCAGCGCCACATTAGCCTTTATAACTCCGTTAATCCTCAGCAAAACGTCGATGG
GATCTGGCTTAGTGGTGGCGGTGCCAATCTGGTTGGTATCACGGACATGCTGAGCAGCGAGCTTTCCCTTGAAGTGGCAC
AACTGAACCCGTTTGGTTTAGTGGAAAACGGCACTAAGAAGTCGATAAAGCAATTGTCTGATTCTGCCGCGTATGGTGTG
GCCATGGGGCTGGCGATCAGTGGAGTAGAATGGCTGAAAGGAAATCACCATGCATAG

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (239-327)

• Type IV pilus assembly protein PilM; (PilM_2) (8-223)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Vibrio cholerae strain A1552	54.706	100	0.55
pilM	Vibrio campbellii strain DS40M4	44.675	100	0.447