Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QM970_RS13045 Genome accession   NZ_CP125980
Coordinates   2427746..2428363 (-) Length   205 a.a.
NCBI ID   WP_046160608.1    Uniprot ID   -
Organism   Bacillus subtilis strain ZKY03     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2422746..2433363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM970_RS13015 (QM970_13010) rpsT 2423047..2423313 (+) 267 WP_003229989.1 30S ribosomal protein S20 -
  QM970_RS13020 (QM970_13015) holA 2423328..2424371 (-) 1044 WP_029317888.1 DNA polymerase III subunit delta -
  QM970_RS13025 (QM970_13020) - 2424411..2424524 (-) 114 WP_122060479.1 hypothetical protein -
  QM970_RS13030 (QM970_13025) yqzM 2424601..2424735 (+) 135 WP_003229983.1 YqzM family protein -
  QM970_RS13035 (QM970_13030) comEC 2424776..2427106 (-) 2331 WP_046160607.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QM970_RS13040 (QM970_13035) comEB 2427110..2427679 (-) 570 WP_003229978.1 ComE operon protein 2 -
  QM970_RS13045 (QM970_13040) comEA 2427746..2428363 (-) 618 WP_046160608.1 competence protein ComEA Machinery gene
  QM970_RS13050 (QM970_13045) comER 2428447..2429268 (+) 822 WP_032726195.1 late competence protein ComER -
  QM970_RS13055 (QM970_13050) yqeM 2429334..2430077 (-) 744 WP_046160609.1 class I SAM-dependent DNA methyltransferase -
  QM970_RS13060 (QM970_13055) rsfS 2430074..2430430 (-) 357 WP_014480315.1 ribosome silencing factor -
  QM970_RS13065 (QM970_13060) yqeK 2430448..2431008 (-) 561 WP_014480316.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  QM970_RS13070 (QM970_13065) nadD 2430998..2431567 (-) 570 WP_004398676.1 nicotinate-nucleotide adenylyltransferase -
  QM970_RS13075 (QM970_13070) yhbY 2431579..2431869 (-) 291 WP_003226133.1 ribosome assembly RNA-binding protein YhbY -
  QM970_RS13080 (QM970_13075) aroE 2431863..2432705 (-) 843 WP_014480317.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21738.48 Da        Isoelectric Point: 4.7284

>NTDB_id=833843 QM970_RS13045 WP_046160608.1 2427746..2428363(-) (comEA) [Bacillus subtilis strain ZKY03]
MNWLNQHKKAIVLAASAAVFTAIMIFLATGKNKEPVKQAVPTEAENTVVKQEANNDESSETIVIDIKGAVQHPGVYEMRT
GDRVSQAIEKAGGTSEQADEAQVNLAEILQDGTVVYIPKKGEETAVQQGGGGSVQSDGGKGALVNINTATLEELQGISGV
GPSKAEAIIAYREENGRFQTIEEITKVSGIGEKLFEKIKSSITVK

Nucleotide


Download         Length: 618 bp        

>NTDB_id=833843 QM970_RS13045 WP_046160608.1 2427746..2428363(-) (comEA) [Bacillus subtilis strain ZKY03]
ATGAATTGGTTGAATCAGCATAAGAAAGCAATTGTTTTAGCGGCTTCTGCGGCTGTTTTCACAGCGATTATGATCTTTCT
GGCCACAGGGAAAAATAAAGAGCCGGTGAAGCAAGCTGTACCAACAGAGGCAGAAAATACAGTGGTAAAGCAGGAAGCAA
ACAACGACGAGTCAAGCGAAACAATTGTGATAGACATCAAAGGTGCTGTTCAGCATCCTGGAGTTTATGAAATGCGAACA
GGGGACAGAGTATCTCAGGCAATTGAGAAAGCGGGCGGGACCAGTGAACAAGCAGACGAAGCGCAAGTAAATTTGGCGGA
GATTTTGCAGGACGGGACAGTGGTGTACATCCCGAAAAAGGGAGAGGAAACAGCAGTGCAGCAAGGTGGCGGAGGGTCTG
TCCAAAGCGATGGAGGGAAGGGAGCGCTGGTGAATATCAATACAGCAACCTTAGAGGAGTTACAAGGCATCTCAGGGGTG
GGGCCATCCAAAGCTGAAGCTATTATTGCATACCGGGAAGAAAACGGGCGTTTCCAAACAATTGAAGAAATCACTAAGGT
TTCAGGAATAGGTGAAAAGTTATTTGAGAAAATAAAGTCTTCCATTACAGTAAAGTGA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(63-118)

Helix-hairpin-helix motif (HHH_3)

(142-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

97.561

100

0.976
  comEA Staphylococcus aureus MW2

35.909

100

0.385
  comEA Staphylococcus aureus N315

35

100

0.376