Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   QLH64_RS21405 Genome accession   NZ_CP125961
Coordinates   4961413..4962756 (+) Length   447 a.a.
NCBI ID   WP_057450857.1    Uniprot ID   A0A0Q7A1V6
Organism   Pseudomonas brassicacearum strain R401     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4956413..4967756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLH64_RS21380 (QLH64_21380) pgeF 4956627..4957352 (-) 726 WP_057450858.1 peptidoglycan editing factor PgeF -
  QLH64_RS21385 (QLH64_21385) rluD 4957349..4958311 (-) 963 WP_003205696.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QLH64_RS21390 (QLH64_21390) - 4958462..4959478 (+) 1017 WP_046065043.1 outer membrane protein assembly factor BamD -
  QLH64_RS21395 (QLH64_21395) - 4959604..4959837 (+) 234 WP_025215539.1 PP0621 family protein -
  QLH64_RS21400 (QLH64_21400) pilS 4959827..4961416 (+) 1590 WP_057450892.1 ATP-binding protein Regulator
  QLH64_RS21405 (QLH64_21405) pilR 4961413..4962756 (+) 1344 WP_057450857.1 sigma-54 dependent transcriptional regulator Regulator
  QLH64_RS21410 (QLH64_21410) - 4962839..4963204 (-) 366 WP_039014157.1 DUF6124 family protein -
  QLH64_RS21415 (QLH64_21415) - 4963701..4964825 (+) 1125 WP_057448847.1 IS481 family transposase -
  QLH64_RS21420 (QLH64_21420) - 4964916..4965104 (+) 189 WP_155252615.1 nucleoid-structuring protein H-NS -
  QLH64_RS21425 (QLH64_21425) - 4965489..4965653 (-) 165 WP_185047044.1 hypothetical protein -
  QLH64_RS21430 (QLH64_21430) - 4965761..4967313 (+) 1553 WP_283544447.1 IS3 family transposase -

Sequence

Protein


Download         Length: 447 a.a.        Molecular weight: 50069.48 Da        Isoelectric Point: 5.9886

>NTDB_id=833715 QLH64_RS21405 WP_057450857.1 4961413..4962756(+) (pilR) [Pseudomonas brassicacearum strain R401]
MNNRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLAEAQALLAGEAFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPPVATPGTTLERSLLGNSPPMLSVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRANQRFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDSEVAAGRFRQDLYYRLNVIELRVPPLRERREDIELLA
NHMLQRLAANTGSPPARLHPQALDSLKNYRFPGNVRELENMLERAYTLCEQQQIEADDLRLAEGNAIEAGNPDLMQVDNL
EDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1344 bp        

>NTDB_id=833715 QLH64_RS21405 WP_057450857.1 4961413..4962756(+) (pilR) [Pseudomonas brassicacearum strain R401]
TTGAATAATCGCTCACGGCAACGAATCCTGATCGTCGATGACGAACCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAAGAACCTTGCCGAGGCCCAAGCCCTGCTGGCGGGGGAAGCCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACCGGCCTGGAACTGGTGCAGCACATCCAGCAACGCTACCCGCAACTGCCC
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACCAA
ACCGGTCGACCTGGGGCGGCTGCGGGAGCTGGTCACCAGTGCCCTGCGCCTGCCGCCGGTCGCCACGCCGGGTACGACCC
TCGAGCGCAGCCTGCTGGGCAACTCGCCACCGATGCTCAGCGTGCGCAAGCAGATCGAAAAACTCGCCCGCAGCCAGGCA
CCGGTGTACATCAGCGGCGAATCGGGCTGCGGCAAGGAACTGGTCGCCCGGCTGATCCACGAACAGGGCCCCCGTGCCAA
CCAGCGCTTTGTACCGGTCAACTGTGGGGCGATTCCCACGGAGCTGATGGAAAGCGAGTTTTTTGGCCATCGAAAAGGCA
GTTTCAGCGGCGCCATCGAGGACAAGCCCGGGCTGTTCCAGGCCGCCCATGGCGGGACCTTGTTCCTCGATGAAGTGGCG
GACCTGCCCTTGGCGATGCAGGTCAAGCTGCTGCGAGCCATCCAGGAAAAAGCCGTGCGCGCTGTTGGCGGCCAGCAGGA
AGAAGTGGTGGATGTGCGAATCCTCTGCGCCACCCACAAGGACCTGGACAGCGAAGTCGCCGCCGGGCGCTTTCGCCAGG
ATTTGTATTACCGGCTGAACGTCATCGAACTGCGCGTCCCGCCGTTGCGCGAACGCCGCGAAGACATAGAGTTGCTGGCC
AATCACATGCTTCAGCGCCTGGCGGCCAACACCGGCAGTCCACCGGCCAGGTTGCATCCCCAGGCGCTGGACTCTCTCAA
GAATTACCGCTTCCCGGGCAATGTGCGGGAACTGGAGAACATGCTTGAACGTGCCTACACCCTTTGTGAACAGCAGCAGA
TCGAAGCGGATGATCTGCGTTTGGCCGAGGGCAATGCGATTGAGGCAGGTAATCCTGATTTGATGCAGGTCGACAACCTG
GAGGATTACCTGGAAGACGTCGAGCGCAAGCTCATCCTCCAGGCATTGGAGGAAACCCGCTGGAACCGCACGGCGGCGGC
GCAGCGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGCTTGGGCTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Bacterial regulatory protein, Fis family (HTH_8)

(404-444)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q7A1V6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.279

99.329

0.787
  pilR Acinetobacter baumannii strain A118

50.217

100

0.517