Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   QLH64_RS21400 Genome accession   NZ_CP125961
Coordinates   4959827..4961416 (+) Length   529 a.a.
NCBI ID   WP_057450892.1    Uniprot ID   -
Organism   Pseudomonas brassicacearum strain R401     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4954827..4966416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLH64_RS21380 (QLH64_21380) pgeF 4956627..4957352 (-) 726 WP_057450858.1 peptidoglycan editing factor PgeF -
  QLH64_RS21385 (QLH64_21385) rluD 4957349..4958311 (-) 963 WP_003205696.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QLH64_RS21390 (QLH64_21390) - 4958462..4959478 (+) 1017 WP_046065043.1 outer membrane protein assembly factor BamD -
  QLH64_RS21395 (QLH64_21395) - 4959604..4959837 (+) 234 WP_025215539.1 PP0621 family protein -
  QLH64_RS21400 (QLH64_21400) pilS 4959827..4961416 (+) 1590 WP_057450892.1 ATP-binding protein Regulator
  QLH64_RS21405 (QLH64_21405) pilR 4961413..4962756 (+) 1344 WP_057450857.1 sigma-54 dependent transcriptional regulator Regulator
  QLH64_RS21410 (QLH64_21410) - 4962839..4963204 (-) 366 WP_039014157.1 DUF6124 family protein -
  QLH64_RS21415 (QLH64_21415) - 4963701..4964825 (+) 1125 WP_057448847.1 IS481 family transposase -
  QLH64_RS21420 (QLH64_21420) - 4964916..4965104 (+) 189 WP_155252615.1 nucleoid-structuring protein H-NS -
  QLH64_RS21425 (QLH64_21425) - 4965489..4965653 (-) 165 WP_185047044.1 hypothetical protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58871.63 Da        Isoelectric Point: 7.1690

>NTDB_id=833714 QLH64_RS21400 WP_057450892.1 4959827..4961416(+) (pilS) [Pseudomonas brassicacearum strain R401]
MSAEASSPREKQAQRLLRLYHLYRLSIGITLVLLISSKLDNRLLEFANDDLLRSGSWLYLVLNILLVVFLENTRRPARLF
GLALTDVLLLSWLFFAAGGVPSAIGNLLIVSVAIGNTLLRSRVGLLIAAVATIGIVGSTFFLGLSDSNRPSSYLQAGTLG
ALCFAAALLVQGLTRRLEASETLAEQRASEVIGLEALNALILQRMRTGILVLDRERRVQLANESALNLLGMHDLVGQRID
DYCSALVERLQLWLNNPSLRPPSLTVTGTGLTLQPSFIALGHDDQQQLLVFLEDLAQVAQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNNADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTTPQRLDLRTWLDQFVRQARESMAEH
QHLHLSIDPGDYTTLMDPDQLTQVLDNLLRNAWRHSAMAHEQAEAWLKLFIDPHSQLSTLDIIDNGPGVTPEQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=833714 QLH64_RS21400 WP_057450892.1 4959827..4961416(+) (pilS) [Pseudomonas brassicacearum strain R401]
GTGAGCGCTGAGGCCTCAAGCCCACGCGAAAAACAGGCGCAGCGCCTGCTGCGTCTCTATCACCTGTATCGTCTGAGCAT
CGGCATCACCTTGGTGCTGCTGATTTCCAGCAAACTGGACAACCGCCTGCTGGAGTTCGCCAATGACGACCTCCTGCGCA
GTGGCAGTTGGTTGTACCTGGTGCTCAATATCCTGCTGGTGGTGTTCCTTGAGAACACCCGTCGCCCTGCCCGGCTGTTC
GGCCTGGCCCTGACTGACGTACTGCTGCTCTCGTGGCTGTTCTTCGCCGCGGGCGGTGTGCCCAGTGCCATCGGCAACCT
GCTCATTGTCTCGGTGGCCATCGGCAATACGCTGTTGCGAAGCCGGGTCGGCCTGCTGATCGCCGCTGTCGCCACGATCG
GTATCGTCGGGTCGACTTTTTTCCTCGGCCTGAGCGACTCAAACCGTCCCAGCAGTTATCTGCAAGCCGGCACCCTGGGG
GCACTGTGTTTTGCCGCCGCCCTGCTGGTACAGGGCCTGACCCGGCGACTGGAAGCCAGTGAAACCCTGGCCGAGCAACG
GGCCAGCGAGGTGATCGGCCTTGAAGCGCTCAACGCGCTGATCCTGCAACGCATGCGCACCGGCATCCTGGTGCTCGACC
GCGAGCGGCGCGTGCAATTGGCCAACGAAAGCGCCTTGAACCTGCTGGGCATGCACGATCTGGTCGGCCAGCGGATCGAT
GACTATTGCTCCGCCCTGGTCGAACGCCTGCAATTGTGGCTGAACAATCCCAGCCTGCGCCCCCCCAGCCTGACCGTGAC
CGGCACAGGCCTGACCCTGCAACCGAGCTTCATCGCCTTGGGGCATGACGATCAGCAGCAATTGCTGGTATTCCTTGAGG
ACCTGGCTCAGGTTGCGCAGCAGGCCCAGCAACTGAAACTCGCTTCCCTCGGGCGCCTGACTGCTGGCATCGCCCATGAA
ATCCGCAACCCCTTGGGCGCCATCAGCCACGCAGCGCAATTACTGCGCGAATCCGAGGAACTGAACAACGCGGATCGGCG
TCTGACGCAGATTATTCAAGATCACTCCCAACGAATGAATCGCGTCATTGAAAACGTCCTGCAGCTGTCTCGCCGCCAGC
AAACCACTCCCCAACGCCTCGACCTGCGGACCTGGCTCGACCAGTTCGTCCGCCAGGCCCGCGAAAGCATGGCCGAGCAC
CAGCACTTGCATCTGAGCATCGACCCGGGCGACTACACCACGCTGATGGACCCCGACCAGTTGACCCAGGTACTCGACAA
CCTGCTGCGCAACGCCTGGCGCCACAGCGCCATGGCCCACGAACAGGCCGAGGCCTGGCTGAAACTGTTCATCGACCCCC
ACAGCCAGCTGTCCACACTGGACATCATCGACAACGGCCCCGGTGTAACACCCGAGCAGCAGGCACATTTGTTCGAACCC
TTCTTTACCACCAGCAGCCAGGGCACCGGCCTTGGGCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAGATTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.227

99.811

0.601