Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   VNTUMSATTG_RS01565 Genome accession   NZ_AP024087
Coordinates   325948..326580 (-) Length   210 a.a.
NCBI ID   WP_004399871.1    Uniprot ID   A0AAV2VTT7
Organism   Vibrio nigripulchritudo strain TUMSAT-TG-2018     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 320948..331580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNTUMSATTG_RS01555 (VNTUMSATTG_02750) rnr 322658..325117 (+) 2460 WP_200766554.1 ribonuclease R -
  VNTUMSATTG_RS01560 (VNTUMSATTG_02760) rlmB 325135..325875 (+) 741 WP_200766555.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  VNTUMSATTG_RS01565 (VNTUMSATTG_02770) crp 325948..326580 (-) 633 WP_004399871.1 cAMP-activated global transcriptional regulator CRP Regulator
  VNTUMSATTG_RS01570 (VNTUMSATTG_02780) - 326824..327693 (-) 870 WP_022551727.1 phosphoribulokinase -
  VNTUMSATTG_RS01575 (VNTUMSATTG_02790) - 327791..328003 (-) 213 WP_004399873.1 YheU family protein -
  VNTUMSATTG_RS01580 (VNTUMSATTG_02800) - 328035..329057 (-) 1023 WP_200766556.1 hydrolase -
  VNTUMSATTG_RS01585 (VNTUMSATTG_02810) - 329054..330445 (-) 1392 WP_200766557.1 PLP-dependent aminotransferase family protein -
  VNTUMSATTG_RS01590 (VNTUMSATTG_02820) - 330567..331163 (+) 597 WP_200766558.1 LysE family translocator -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23639.39 Da        Isoelectric Point: 7.4009

>NTDB_id=83369 VNTUMSATTG_RS01565 WP_004399871.1 325948..326580(-) (crp) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKTPCEVAEISFKKFRQLIQVNPDILMRLSAQMANRLQTTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=83369 VNTUMSATTG_RS01565 WP_004399871.1 325948..326580(-) (crp) [Vibrio nigripulchritudo strain TUMSAT-TG-2018]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCATCAAA
AAGTACTCTGATTCATGCTGGTGAAAAGGCAGAGACCCTGTACTACATTGTGAAAGGTTCTGTTGCCGTACTGATCAAGG
ATGAAGAAGGCAAAGAAATGATCTTGTCTTACCTCAACCAAGGTGATTTTATCGGCGAACTTGGTCTGTTCGAAGAAGAC
CAGGAACGTACCGCTTGGGTACGTGCGAAAACCCCGTGTGAAGTAGCAGAAATCTCATTTAAGAAGTTCCGTCAGCTGAT
TCAGGTTAACCCTGATATCCTAATGCGCCTTTCTGCGCAAATGGCGAACCGTCTTCAAACAACAAGCCAGAAAGTGGGCG
ACCTTGCATTCCTAGACGTAACAGGTCGTATCGCTCAAACGCTTCTGAACCTTGCGAAGCAACCAGACGCAATGACTCAC
CCAGACGGTATGCAAATCAAGATTACCCGTCAGGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAAACAGTAGGTCGTAT
CCTGAAAATGCTGGAAGAGCAAAACCTCATTTCAGCACACGGTAAGACTATCGTTGTTTACGGCACTCGCTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment