Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   QNH97_RS20450 Genome accession   NZ_CP125957
Coordinates   4700792..4703038 (-) Length   748 a.a.
NCBI ID   WP_283553644.1    Uniprot ID   -
Organism   Pseudomonas sp. G2-4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4695792..4708038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH97_RS20415 (QNH97_20415) murB 4696175..4697194 (-) 1020 WP_283553638.1 UDP-N-acetylmuramate dehydrogenase -
  QNH97_RS20420 (QNH97_20420) - 4697191..4697655 (-) 465 WP_283553639.1 low molecular weight protein-tyrosine-phosphatase -
  QNH97_RS20425 (QNH97_20425) kdsB 4697655..4698419 (-) 765 WP_283553640.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QNH97_RS20430 (QNH97_20430) - 4698416..4698601 (-) 186 WP_003179363.1 Trm112 family protein -
  QNH97_RS20435 (QNH97_20435) lpxK 4698625..4699635 (-) 1011 WP_283553641.1 tetraacyldisaccharide 4'-kinase -
  QNH97_RS20440 (QNH97_20440) - 4699635..4700063 (-) 429 WP_283553642.1 biopolymer transporter ExbD -
  QNH97_RS20445 (QNH97_20445) exbB 4700060..4700695 (-) 636 WP_283553643.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QNH97_RS20450 (QNH97_20450) comA 4700792..4703038 (-) 2247 WP_283553644.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QNH97_RS20455 (QNH97_20455) - 4703184..4703699 (+) 516 WP_283553645.1 DUF2062 domain-containing protein -
  QNH97_RS20460 (QNH97_20460) - 4703998..4704777 (-) 780 WP_283553646.1 ABC transporter permease -
  QNH97_RS20465 (QNH97_20465) - 4704774..4705706 (-) 933 WP_283553647.1 ABC transporter ATP-binding protein -
  QNH97_RS20470 (QNH97_20470) - 4705840..4706463 (-) 624 WP_283553648.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 748 a.a.        Molecular weight: 81480.60 Da        Isoelectric Point: 10.2253

>NTDB_id=833664 QNH97_RS20450 WP_283553644.1 4700792..4703038(-) (comA) [Pseudomonas sp. G2-4]
MRTGLVALALGLLAPVFLPALPPLWLIVVMPVLALMVLPFRTYPLGFFLFGLAWACLSAQFALDDRLPATLEGETRWVEG
RVVGLPQYSDGVVRFELAEAQSRRTRLPTSMRLAWFGGPPVSSGEQWRLAVKLKRPAGLLNPHGFDYEAWLLSRGVGATG
TVKDGRRLQAAQGAWRDSVRQALAQVDAQGRSGALAALVLGDGSGLSRDDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
VAGAARYGVWPERLPWLPWACALAFSAALGYGLLAGFEVPVRRACAMIGLVLLWRLRFKHPDPWWAWLLAFNGVLLFDPL
ASLRPGFWLSFAAVAILMFTFGGRLGPWRWWQTWTRAQWLVAVGLCPLLLILGLPVSLSGPLVNLLAVPWISLLVLPPAL
LGTALLPVPFIGEGLLWIAGGLLDLLFKGLAWVAGRMPAWVPASIPPWAWSIAVLGAFLLLLPRGLPLRVLGWPMLLLMV
FPPRESVPPGRAEIWHLDVGQGLAVLVRTHRHTLLYDAGPRFGDADMGKRVVLPTLRKLGVQALDLMLLSHADADHAGGA
QAVRNGLPTTRVISGDPAALPVGLQAGECDSGERWEWDGVRFELWQWSAAVESNQKSCVLLVEAGGERLLLTGDVDIHAE
RALLDGPLATPIQWLAAPHHGSRSSSSMALLSRLKPHSVLISRGQGNAFGHPHPRVLARYRRLGMAIYDSAEQGAIRLQL
GAHEPPFTQVGQRRYWRSPSPVGPKAEH

Nucleotide


Download         Length: 2247 bp        

>NTDB_id=833664 QNH97_RS20450 WP_283553644.1 4700792..4703038(-) (comA) [Pseudomonas sp. G2-4]
ATGCGCACAGGATTAGTCGCGCTTGCACTGGGGCTGTTGGCCCCGGTTTTTTTACCGGCACTGCCACCGCTATGGCTGAT
TGTCGTCATGCCGGTGCTGGCGCTGATGGTTTTGCCGTTTCGAACCTATCCGCTGGGTTTTTTCCTGTTCGGGTTGGCCT
GGGCTTGCCTTTCGGCGCAGTTTGCGCTGGACGACCGATTGCCCGCCACGCTGGAGGGAGAGACGCGCTGGGTCGAAGGG
CGCGTCGTCGGCTTGCCGCAGTACAGCGACGGCGTGGTGCGCTTCGAGCTGGCCGAGGCCCAGTCACGTCGTACCCGGCT
GCCGACGTCGATGCGCCTGGCTTGGTTCGGCGGTCCGCCCGTCAGCAGCGGCGAGCAATGGCGACTGGCAGTGAAACTCA
AACGGCCCGCCGGGTTGCTGAACCCGCACGGATTTGACTATGAAGCCTGGTTGTTGAGCCGGGGCGTCGGCGCGACTGGC
ACGGTGAAGGATGGCCGTCGCCTCCAGGCGGCCCAGGGCGCTTGGCGCGACAGCGTGCGACAGGCGCTGGCCCAGGTCGA
CGCCCAGGGTCGTTCCGGTGCGTTGGCGGCCTTGGTGCTTGGTGACGGCAGCGGGTTGAGCCGCGATGATTGGCAAGTGC
TGCAAGACACGGGCACTGTCCATTTGCTAGTGATCTCCGGGCAGCACATCGGGTTGCTCGCCGGCCTGGTGTACCTGCTT
GTGGCCGGTGCGGCACGCTATGGTGTGTGGCCGGAGCGTCTGCCATGGTTGCCTTGGGCTTGCGCGCTGGCCTTCAGCGC
AGCCTTGGGCTACGGCTTGCTCGCCGGCTTCGAGGTGCCGGTGCGGCGAGCCTGCGCGATGATTGGGCTGGTGCTGCTGT
GGCGCTTGCGCTTCAAGCATCCGGACCCCTGGTGGGCATGGCTGCTGGCCTTTAATGGCGTGTTGCTGTTCGATCCGCTG
GCCAGCCTGCGACCAGGGTTCTGGCTGTCGTTTGCGGCGGTGGCGATATTGATGTTCACCTTTGGCGGGCGCTTGGGCCC
CTGGCGCTGGTGGCAGACCTGGACCCGTGCCCAATGGCTGGTTGCGGTCGGTCTGTGTCCGCTGCTGTTGATATTGGGCT
TGCCGGTCAGCCTCAGCGGGCCACTGGTAAACCTGCTGGCGGTGCCTTGGATCAGCCTGTTGGTGTTGCCGCCGGCGCTG
CTCGGCACGGCGTTGTTACCGGTGCCGTTCATCGGTGAAGGGCTGCTGTGGATCGCGGGCGGCTTGCTCGACTTGTTGTT
CAAGGGGCTGGCATGGGTAGCCGGGCGAATGCCTGCTTGGGTGCCTGCTTCGATTCCGCCCTGGGCCTGGAGCATCGCCG
TCCTCGGTGCTTTTTTACTGTTGTTGCCCAGGGGGCTGCCGCTGCGGGTGCTGGGGTGGCCGATGTTGCTGTTGATGGTT
TTTCCGCCGCGAGAAAGTGTGCCGCCAGGCCGCGCCGAAATCTGGCATCTGGACGTAGGCCAAGGGCTTGCGGTGCTTGT
GCGTACCCATCGCCATACCCTGCTTTACGATGCCGGGCCGCGCTTTGGTGACGCCGACATGGGTAAGCGCGTGGTGTTGC
CCACCTTGCGCAAGCTGGGGGTGCAGGCCCTGGACCTGATGCTGCTCAGCCATGCCGACGCCGATCACGCCGGCGGCGCC
CAAGCCGTACGTAACGGCTTGCCAACGACGCGGGTCATCAGTGGCGATCCTGCCGCCCTGCCTGTCGGGCTGCAAGCTGG
AGAGTGCGACAGCGGCGAGCGTTGGGAATGGGATGGGGTCAGGTTCGAACTGTGGCAGTGGTCCGCAGCTGTTGAAAGCA
ACCAGAAGTCCTGCGTCTTGCTGGTCGAGGCTGGCGGCGAGCGCTTGCTGCTGACCGGCGATGTCGATATCCATGCCGAA
CGCGCCTTGCTCGACGGGCCTCTGGCGACACCGATCCAATGGCTGGCTGCTCCGCATCATGGCAGCCGCAGTTCCTCGTC
GATGGCGCTGTTGTCACGCTTGAAACCTCATTCGGTGCTGATCTCCCGGGGGCAAGGCAACGCGTTTGGTCATCCGCATC
CCCGGGTGCTCGCTCGATACCGACGGCTGGGCATGGCGATTTACGACAGTGCCGAGCAAGGCGCCATTCGTCTGCAGCTG
GGCGCCCATGAACCACCTTTCACCCAGGTCGGGCAGCGACGCTACTGGCGCAGTCCGTCGCCCGTGGGGCCAAAGGCCGA
ACATTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(22-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-675)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.335

95.722

0.578
  comA Ralstonia pseudosolanacearum GMI1000

32.824

100

0.373