Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QNH97_RS20445 Genome accession   NZ_CP125957
Coordinates   4700060..4700695 (-) Length   211 a.a.
NCBI ID   WP_283553643.1    Uniprot ID   -
Organism   Pseudomonas sp. G2-4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4695060..4705695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH97_RS20410 (QNH97_20410) - 4695437..4695907 (-) 471 WP_283553637.1 (2Fe-2S)-binding protein -
  QNH97_RS20415 (QNH97_20415) murB 4696175..4697194 (-) 1020 WP_283553638.1 UDP-N-acetylmuramate dehydrogenase -
  QNH97_RS20420 (QNH97_20420) - 4697191..4697655 (-) 465 WP_283553639.1 low molecular weight protein-tyrosine-phosphatase -
  QNH97_RS20425 (QNH97_20425) kdsB 4697655..4698419 (-) 765 WP_283553640.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QNH97_RS20430 (QNH97_20430) - 4698416..4698601 (-) 186 WP_003179363.1 Trm112 family protein -
  QNH97_RS20435 (QNH97_20435) lpxK 4698625..4699635 (-) 1011 WP_283553641.1 tetraacyldisaccharide 4'-kinase -
  QNH97_RS20440 (QNH97_20440) - 4699635..4700063 (-) 429 WP_283553642.1 biopolymer transporter ExbD -
  QNH97_RS20445 (QNH97_20445) exbB 4700060..4700695 (-) 636 WP_283553643.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QNH97_RS20450 (QNH97_20450) comA 4700792..4703038 (-) 2247 WP_283553644.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QNH97_RS20455 (QNH97_20455) - 4703184..4703699 (+) 516 WP_283553645.1 DUF2062 domain-containing protein -
  QNH97_RS20460 (QNH97_20460) - 4703998..4704777 (-) 780 WP_283553646.1 ABC transporter permease -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22840.93 Da        Isoelectric Point: 7.3613

>NTDB_id=833663 QNH97_RS20445 WP_283553643.1 4700060..4700695(-) (exbB) [Pseudomonas sp. G2-4]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGGKQ

Nucleotide


Download         Length: 636 bp        

>NTDB_id=833663 QNH97_RS20445 WP_283553643.1 4700060..4700695(-) (exbB) [Pseudomonas sp. G2-4]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCATCTGCTAGGGCAGGTGTGGGTCTGGATCAAGGATA
AGCAACTGAACAAGGACAAGCTCAAGGAACTGCGGGCCAGTTCGCCCTTGGGGGAAATCCTGGCGGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCCGCTCGAGTCATCCATGAACTGGAGCGCTATAT
CAACGCCTTGGGCACCATCGCCGCCATGGCCCCATTGCTGGGCCTGCTGGGGACGGTGCTGGGCATGATCGACATTTTCA
GCGCGTTCACCGGATCCGGCATGACCACCAACGCCTCGGTATTGGCTGGTGGTATTTCCAAGGCCCTGATCACCACCGCT
GCGGGCCTGATGGTGGGGATCCCTTCGGTCTTTTTCCATCGATTCCTGCAACGACGCATCGACGAGTTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTGGAGGTGGTGCAAGGCGACCGTGACGTGGACCTGGCCGGGGGCAAGCAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.714

99.526

0.853