Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | Fi14EGH31_RS14475 | Genome accession | NZ_AP024085 |
| Coordinates | 2725195..2725677 (-) | Length | 160 a.a. |
| NCBI ID | WP_022001179.1 | Uniprot ID | A0A2T3G639 |
| Organism | Faecalibacillus intestinalis strain 14EGH31 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 2713800..2741492 | 2725195..2725677 | within | 0 |
Gene organization within MGE regions
Location: 2713800..2741492
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Fi14EGH31_RS14400 (Fi14EGH31_27880) | - | 2713800..2714108 (+) | 309 | WP_200764971.1 | transposase | - |
| Fi14EGH31_RS15770 | - | 2714071..2714223 (+) | 153 | WP_107029141.1 | transposase | - |
| Fi14EGH31_RS14405 (Fi14EGH31_27890) | - | 2714383..2715507 (-) | 1125 | WP_117828363.1 | MFS transporter | - |
| Fi14EGH31_RS14410 (Fi14EGH31_27900) | - | 2715603..2716610 (+) | 1008 | WP_234697804.1 | helix-turn-helix domain-containing protein | - |
| Fi14EGH31_RS14415 (Fi14EGH31_27910) | - | 2716643..2717017 (-) | 375 | WP_107029143.1 | desulfoferrodoxin family protein | - |
| Fi14EGH31_RS14420 (Fi14EGH31_27920) | - | 2717127..2717570 (-) | 444 | WP_117864233.1 | Rrf2 family transcriptional regulator | - |
| Fi14EGH31_RS14425 (Fi14EGH31_27930) | - | 2717664..2718179 (-) | 516 | WP_117480480.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| Fi14EGH31_RS14430 | - | 2718792..2720208 (+) | 1417 | Protein_2818 | recombinase family protein | - |
| Fi14EGH31_RS14435 (Fi14EGH31_27970) | - | 2720349..2720786 (+) | 438 | WP_107029146.1 | radical SAM mobile pair system MarR family transcriptional regulator | - |
| Fi14EGH31_RS14440 (Fi14EGH31_27980) | - | 2720783..2721472 (+) | 690 | WP_107029147.1 | radical SAM mobile pair protein A | - |
| Fi14EGH31_RS14445 (Fi14EGH31_27990) | - | 2721460..2722368 (+) | 909 | WP_107029148.1 | radical SAM mobile pair protein B | - |
| Fi14EGH31_RS14450 (Fi14EGH31_28000) | - | 2722535..2722888 (-) | 354 | WP_107029149.1 | cupin domain-containing protein | - |
| Fi14EGH31_RS14455 (Fi14EGH31_28010) | - | 2723031..2723363 (+) | 333 | WP_107029150.1 | helix-turn-helix domain-containing protein | - |
| Fi14EGH31_RS14460 (Fi14EGH31_28030) | - | 2723743..2724183 (+) | 441 | WP_117575410.1 | helix-turn-helix domain-containing protein | - |
| Fi14EGH31_RS14465 (Fi14EGH31_28040) | - | 2724288..2724680 (+) | 393 | WP_146137612.1 | hypothetical protein | - |
| Fi14EGH31_RS14470 (Fi14EGH31_28050) | rpsR | 2724947..2725177 (-) | 231 | WP_022001180.1 | 30S ribosomal protein S18 | - |
| Fi14EGH31_RS14475 (Fi14EGH31_28060) | ssb | 2725195..2725677 (-) | 483 | WP_022001179.1 | single-stranded DNA-binding protein | Machinery gene |
| Fi14EGH31_RS14480 (Fi14EGH31_28070) | rpsF | 2725695..2725976 (-) | 282 | WP_022001178.1 | 30S ribosomal protein S6 | - |
| Fi14EGH31_RS14485 (Fi14EGH31_28080) | - | 2726156..2726500 (+) | 345 | WP_117864231.1 | hypothetical protein | - |
| Fi14EGH31_RS14490 | - | 2726597..2726845 (+) | 249 | WP_033121501.1 | DUF6061 family protein | - |
| Fi14EGH31_RS14495 (Fi14EGH31_28090) | - | 2726895..2727920 (-) | 1026 | WP_055228679.1 | HAMP domain-containing sensor histidine kinase | - |
| Fi14EGH31_RS14500 (Fi14EGH31_28100) | - | 2727917..2728594 (-) | 678 | WP_055228678.1 | response regulator transcription factor | - |
| Fi14EGH31_RS14505 (Fi14EGH31_28110) | - | 2728614..2730686 (-) | 2073 | WP_117864225.1 | ABC transporter permease | - |
| Fi14EGH31_RS14510 (Fi14EGH31_28120) | - | 2730676..2731443 (-) | 768 | WP_033121505.1 | ABC transporter ATP-binding protein | - |
| Fi14EGH31_RS14515 (Fi14EGH31_28130) | - | 2731521..2732708 (-) | 1188 | WP_117864223.1 | hypothetical protein | - |
| Fi14EGH31_RS14520 (Fi14EGH31_28140) | - | 2732744..2733451 (-) | 708 | WP_055228676.1 | hypothetical protein | - |
| Fi14EGH31_RS14525 (Fi14EGH31_28150) | - | 2733462..2734568 (-) | 1107 | WP_033121508.1 | DUF6076 domain-containing protein | - |
| Fi14EGH31_RS14530 (Fi14EGH31_28160) | - | 2734791..2735411 (+) | 621 | WP_033121509.1 | CHC2 zinc finger domain-containing protein | - |
| Fi14EGH31_RS14535 (Fi14EGH31_28170) | - | 2735386..2736759 (+) | 1374 | WP_227351978.1 | phage/plasmid primase, P4 family | - |
| Fi14EGH31_RS14540 | - | 2737160..2737375 (+) | 216 | WP_055228675.1 | hypothetical protein | - |
| Fi14EGH31_RS14545 (Fi14EGH31_28190) | - | 2737722..2739011 (+) | 1290 | WP_200764972.1 | plasmid recombination protein | - |
| Fi14EGH31_RS14550 (Fi14EGH31_28200) | - | 2739030..2739332 (+) | 303 | WP_033121834.1 | hypothetical protein | - |
| Fi14EGH31_RS14555 (Fi14EGH31_28210) | - | 2739413..2741059 (+) | 1647 | WP_200764973.1 | recombinase family protein | - |
| Fi14EGH31_RS14560 (Fi14EGH31_28220) | - | 2741142..2741492 (-) | 351 | WP_117480482.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 160 a.a. Molecular weight: 18214.18 Da Isoelectric Point: 4.6109
>NTDB_id=83363 Fi14EGH31_RS14475 WP_022001179.1 2725195..2725677(-) (ssb) [Faecalibacillus intestinalis strain 14EGH31]
MINRVVMVGRMTRDPELRRTGNGAAVTSFTLALNRNYNSADGQQADYISCVVWNKVAENVAQYCAKGSLVGVEGRLRSRS
YDNAQGQRVYVTEVVCDSVQFLETRAQRERNQSSMNQGMMNNQYSQPAQPQTDNFQDMQTVELEKDFDNSFNIMEDDIQF
MINRVVMVGRMTRDPELRRTGNGAAVTSFTLALNRNYNSADGQQADYISCVVWNKVAENVAQYCAKGSLVGVEGRLRSRS
YDNAQGQRVYVTEVVCDSVQFLETRAQRERNQSSMNQGMMNNQYSQPAQPQTDNFQDMQTVELEKDFDNSFNIMEDDIQF
Nucleotide
Download Length: 483 bp
>NTDB_id=83363 Fi14EGH31_RS14475 WP_022001179.1 2725195..2725677(-) (ssb) [Faecalibacillus intestinalis strain 14EGH31]
ATGATTAATAGAGTTGTTATGGTTGGTAGAATGACTCGTGATCCAGAACTTAGAAGAACTGGAAACGGGGCTGCAGTTAC
AAGTTTTACGTTAGCGTTAAATCGTAACTATAATTCTGCAGATGGGCAACAAGCTGATTATATTTCATGCGTTGTATGGA
ATAAAGTCGCTGAAAATGTTGCACAATATTGTGCAAAAGGATCTTTAGTAGGAGTTGAAGGTAGACTTCGTTCTAGATCT
TATGATAATGCTCAAGGACAACGCGTATACGTTACAGAAGTTGTTTGTGACTCTGTTCAATTCTTAGAAACAAGAGCTCA
AAGAGAAAGAAACCAAAGTTCTATGAACCAAGGTATGATGAATAATCAATATTCTCAACCTGCTCAACCACAAACAGATA
ATTTCCAAGATATGCAAACAGTTGAATTAGAAAAAGATTTTGATAATTCATTTAATATCATGGAAGACGATATTCAATTT
TAG
ATGATTAATAGAGTTGTTATGGTTGGTAGAATGACTCGTGATCCAGAACTTAGAAGAACTGGAAACGGGGCTGCAGTTAC
AAGTTTTACGTTAGCGTTAAATCGTAACTATAATTCTGCAGATGGGCAACAAGCTGATTATATTTCATGCGTTGTATGGA
ATAAAGTCGCTGAAAATGTTGCACAATATTGTGCAAAAGGATCTTTAGTAGGAGTTGAAGGTAGACTTCGTTCTAGATCT
TATGATAATGCTCAAGGACAACGCGTATACGTTACAGAAGTTGTTTGTGACTCTGTTCAATTCTTAGAAACAAGAGCTCA
AAGAGAAAGAAACCAAAGTTCTATGAACCAAGGTATGATGAATAATCAATATTCTCAACCTGCTCAACCACAAACAGATA
ATTTCCAAGATATGCAAACAGTTGAATTAGAAAAAGATTTTGATAATTCATTTAATATCATGGAAGACGATATTCAATTT
TAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
44.767 |
100 |
0.481 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.303 |
74.375 |
0.419 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
52.727 |
68.75 |
0.362 |