Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   QM339_RS06135 Genome accession   NZ_CP125899
Coordinates   1244685..1245182 (-) Length   165 a.a.
NCBI ID   WP_001796472.1    Uniprot ID   A0A5F0HJ55
Organism   Staphylococcus aureus strain CHAL3     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1239685..1250182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM339_RS06110 (QM339_06110) gcvPB 1239847..1241319 (-) 1473 WP_000202176.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  QM339_RS06115 (QM339_06115) gcvPA 1241312..1242658 (-) 1347 WP_031928187.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  QM339_RS06120 (QM339_06120) gcvT 1242678..1243769 (-) 1092 WP_000093344.1 glycine cleavage system aminomethyltransferase GcvT -
  QM339_RS06125 (QM339_06125) - 1243928..1244452 (-) 525 WP_001015120.1 shikimate kinase -
  QM339_RS06130 (QM339_06130) - 1244442..1244588 (-) 147 WP_001789879.1 hypothetical protein -
  QM339_RS06135 (QM339_06135) comGF 1244685..1245182 (-) 498 WP_001796472.1 competence type IV pilus minor pilin ComGF Machinery gene
  QM339_RS06140 (QM339_06140) comGE 1245100..1245399 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  QM339_RS06145 (QM339_06145) comGD 1245386..1245832 (-) 447 WP_283502335.1 competence type IV pilus minor pilin ComGD Machinery gene
  QM339_RS06150 (QM339_06150) comGC 1245810..1246121 (-) 312 WP_000472255.1 competence type IV pilus major pilin ComGC Machinery gene
  QM339_RS06155 (QM339_06155) comGB 1246135..1247205 (-) 1071 WP_000776409.1 competence type IV pilus assembly protein ComGB Machinery gene
  QM339_RS06160 (QM339_06160) comGA 1247177..1248151 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  QM339_RS06165 (QM339_06165) - 1248203..1248826 (-) 624 WP_001223009.1 MBL fold metallo-hydrolase -
  QM339_RS06170 (QM339_06170) - 1248823..1249152 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QM339_RS06175 (QM339_06175) - 1249152..1250138 (-) 987 WP_000161307.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19169.89 Da        Isoelectric Point: 10.1358

>NTDB_id=833508 QM339_RS06135 WP_001796472.1 1244685..1245182(-) (comGF) [Staphylococcus aureus strain CHAL3]
MILSKVTNKYVPFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDKNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNLQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=833508 QM339_RS06135 WP_001796472.1 1244685..1245182(-) (comGF) [Staphylococcus aureus strain CHAL3]
ATGATATTAAGCAAAGTGACCAACAAATATGTGCCATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTTATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGTGTAGATAAAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCTATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATCTGCAGACT
AAAACAATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(68-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5F0HJ55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

98.182

100

0.982
  comGF Staphylococcus aureus MW2

95.758

100

0.958