Detailed information NTG0833226

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QMY49_RS01135
• Genome accession: NZ_CP125875
• Coordinates: 221321..222190 (-)
• Length: 289 a.a.
• NCBI ID: WP_005446255.1
• Uniprot ID: A0A3A1Q6Q3
• Organism: Vibrio harveyi strain SB1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 216321..227190

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMY49_RS01100 (QMY49_01100)	rpsP	217319..217567 (+)	249	WP_004410028.1	30S ribosomal protein S16	-
QMY49_RS01105 (QMY49_01105)	rimM	217596..218144 (+)	549	WP_005446245.1	ribosome maturation factor RimM	-
QMY49_RS01110 (QMY49_01110)	trmD	218172..218915 (+)	744	WP_005446247.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
QMY49_RS01115 (QMY49_01115)	rplS	218957..219310 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
QMY49_RS01120 (QMY49_01120)	yacG	219681..219881 (-)	201	WP_026000212.1	DNA gyrase inhibitor YacG	-
QMY49_RS01125 (QMY49_01125)	zapD	219938..220678 (-)	741	WP_005446251.1	cell division protein ZapD	-
QMY49_RS01130 (QMY49_01130)	coaE	220706..221320 (-)	615	WP_017817675.1	dephospho-CoA kinase	-
QMY49_RS01135 (QMY49_01135)	pilD	221321..222190 (-)	870	WP_005446255.1	A24 family peptidase	Machinery gene
QMY49_RS01140 (QMY49_01140)	pilC	222263..223486 (-)	1224	WP_005446256.1	type II secretion system F family protein	Machinery gene
QMY49_RS01145 (QMY49_01145)	pilB	223520..225205 (-)	1686	WP_017189132.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QMY49_RS01150 (QMY49_01150)	pilA	225217..225654 (-)	438	WP_029790345.1	pilin	Machinery gene
QMY49_RS01155 (QMY49_01155)	nadC	225920..226807 (-)	888	WP_283312494.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32536.74 Da
• Isoelectric Point: 7.5422

>NTDB_id=833226 QMY49_RS01135 WP_005446255.1 221321..222190(-) (pilD) [Vibrio harveyi strain SB1]
MEVFQYYPWLFVVFTAIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTHIRIR
DNIPVISWLLLKGKCHNCQSPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISPVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGNQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=833226 QMY49_RS01135 WP_005446255.1 221321..222190(-) (pilD) [Vibrio harveyi strain SB1]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTATTTACCGCTATTTTTGGTTTGATCGTGGGTAGTTTCCTCAA
CGTAGTTATTTACCGTTTACCTAAGATCATGGAACTAGAATGGCGACGCGAGTGCGCTGAATCATTCCCTGAATACAAGA
TCGAGCCACCAAAAGAGACATTAACCTTAAGCGTGCCACGTTCATCTTGTCAGCAATGCGGTACACATATCCGCATTAGA
GACAATATCCCTGTGATTAGTTGGCTATTACTAAAAGGTAAATGCCACAACTGCCAATCACCTATCAGTGCCCGTTACCC
TCTTATCGAACTGCTTACCGCTTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTGGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACATTTATCGACCTTGATACCATGTTGCTGCCAGACCAACTCACACTGCCA
TTGATGTGGGCGGGTATTGCTCTTGCTCTTGCCGGTATCAGCCCTGTGAGTCTTCAAGATTCTATTATTGGAGCAATGGC
AGGCTACTTATGTCTTTGGAGTGTTTATTGGTTATTCAAACTCCTCACAGGCAAAGAGGGAATGGGCTATGGTGACTTTA
AACTCCTTGCTGCATTAGGAGCTTGGCTGGGCTGGCAATCTCTGCCGATGATCATTTTACTTTCTTCGGTAGTAGGCGTC
ATTTTTGGTCTTATCCAGCTGCGCTTGCAAAAGCAAGGTATCGAAAAAGCCTTTCCTTTTGGTCCTTACCTTGCAATTGC
AGGATGGGTGAGCCTAATTTGGGGCAATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

3D structure

• AlphaFold DB: A0A3A1Q6Q3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	97.232	100	0.972
pilD	Vibrio cholerae strain A1552	74.306	99.654	0.74
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Acinetobacter nosocomialis M2	52.399	93.772	0.491
pilD	Neisseria gonorrhoeae MS11	45.652	95.502	0.436